miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 5' -53.1 NC_006273.1 + 106163 0.69 0.953555
Target:  5'- gCGCAGauaccgGGCgCGUGCACGUAGGc -3'
miRNA:   3'- -GUGUUacagaaCCG-GCACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 108553 0.69 0.945227
Target:  5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3'
miRNA:   3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 111483 0.71 0.875725
Target:  5'- aUACGAUGUCaUUGGCCGcUGCGaa-GGGa -3'
miRNA:   3'- -GUGUUACAG-AACCGGC-ACGUgcgUCC- -5'
30056 5' -53.1 NC_006273.1 + 118026 0.72 0.845442
Target:  5'- gACGGUGgaagUGGCgG-GCACGCGGGu -3'
miRNA:   3'- gUGUUACaga-ACCGgCaCGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 143175 0.66 0.989092
Target:  5'- aCACAGg--UUUGGCgccCGUagGCGCGCGGGu -3'
miRNA:   3'- -GUGUUacaGAACCG---GCA--CGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 145552 0.68 0.964372
Target:  5'- gACGggGUUccgggcGGCgGUGCugGCGGGg -3'
miRNA:   3'- gUGUuaCAGaa----CCGgCACGugCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 154401 0.74 0.785401
Target:  5'- uGCGAUGUCUcugaccuggUGGCCGUGCccgACGaCAGc -3'
miRNA:   3'- gUGUUACAGA---------ACCGGCACG---UGC-GUCc -5'
30056 5' -53.1 NC_006273.1 + 156877 0.67 0.984377
Target:  5'- -cCGGUGUCcgGGCgGcGC-CGCAGGg -3'
miRNA:   3'- guGUUACAGaaCCGgCaCGuGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 157835 0.74 0.776214
Target:  5'- gCACGAUGUCgUGGUuagcggCGUGCA-GCAGGu -3'
miRNA:   3'- -GUGUUACAGaACCG------GCACGUgCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 158201 0.68 0.970518
Target:  5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3'
miRNA:   3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 165094 0.7 0.908737
Target:  5'- ---uGUGUCUUGG-CGUcGCACGCGGa -3'
miRNA:   3'- guguUACAGAACCgGCA-CGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 169356 0.7 0.935975
Target:  5'- gGCGAUGagCgccgGGCCGUGCugacgucCGUAGGg -3'
miRNA:   3'- gUGUUACa-Gaa--CCGGCACGu------GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 169918 0.66 0.991561
Target:  5'- -cCAGUGUUUUGGacguCGUGgACGgGGGu -3'
miRNA:   3'- guGUUACAGAACCg---GCACgUGCgUCC- -5'
30056 5' -53.1 NC_006273.1 + 170870 0.67 0.984377
Target:  5'- aCAcCGAUGUCga-GCCG-GCGgGCGGGu -3'
miRNA:   3'- -GU-GUUACAGaacCGGCaCGUgCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 173723 0.71 0.896209
Target:  5'- cCGCuuUGUCcgUGGcCCGUGCcCGCAGc -3'
miRNA:   3'- -GUGuuACAGa-ACC-GGCACGuGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 174421 0.67 0.975865
Target:  5'- gCACAcUGgcagacCUUGGUCGacguUGCACGCGGa -3'
miRNA:   3'- -GUGUuACa-----GAACCGGC----ACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 178080 0.68 0.967548
Target:  5'- aGCGAgaauucGGCCGUGCACGUGGa -3'
miRNA:   3'- gUGUUacagaaCCGGCACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 185210 0.68 0.960984
Target:  5'- gAUAGUGUCUauaaaGGCCGUGC-CGCc-- -3'
miRNA:   3'- gUGUUACAGAa----CCGGCACGuGCGucc -5'
30056 5' -53.1 NC_006273.1 + 188964 0.66 0.991997
Target:  5'- gGCGGUGuuuUCUUGGUgggcggCGUGCucagguucuuacgcgGCGCGGGu -3'
miRNA:   3'- gUGUUAC---AGAACCG------GCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195016 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.