Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 5' | -53.1 | NC_006273.1 | + | 195061 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195133 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 196343 | 0.66 | 0.987513 |
Target: 5'- gACGGUGggCgacaaggccGGCCaucccgagggucuGUGCGCGCAGGa -3' miRNA: 3'- gUGUUACa-Gaa-------CCGG-------------CACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 196666 | 0.68 | 0.960984 |
Target: 5'- aACGGUGaaUCUUGGCgUGgcGCACGCAGcGg -3' miRNA: 3'- gUGUUAC--AGAACCG-GCa-CGUGCGUC-C- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 199022 | 0.66 | 0.993009 |
Target: 5'- uGCGGcUGUCgcgcgaccucaggGGCuuCGUGCGCGUGGGg -3' miRNA: 3'- gUGUU-ACAGaa-----------CCG--GCACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 199598 | 0.7 | 0.935975 |
Target: 5'- aACAggGgugCUUGGCCGUGgACuucCAGGg -3' miRNA: 3'- gUGUuaCa--GAACCGGCACgUGc--GUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 207114 | 0.66 | 0.991561 |
Target: 5'- aGCAGUGUgCUccagaagGGCaGUGUaucGCGCAGGu -3' miRNA: 3'- gUGUUACA-GAa------CCGgCACG---UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 216854 | 0.73 | 0.803359 |
Target: 5'- gGCAugugGUCaaaaGGCCGgcagGCGCGCAGGc -3' miRNA: 3'- gUGUua--CAGaa--CCGGCa---CGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 216968 | 0.68 | 0.970518 |
Target: 5'- uCGCGGgccGUCUUGGCCacgGC-CGCAGc -3' miRNA: 3'- -GUGUUa--CAGAACCGGca-CGuGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 217384 | 0.66 | 0.991997 |
Target: 5'- gCGCAGUG-CUacggugguucccuggUGGCgcUGCACGUAGGu -3' miRNA: 3'- -GUGUUACaGA---------------ACCGgcACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 234954 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 234999 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 235071 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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