Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 5' | -53.1 | NC_006273.1 | + | 39974 | 0.66 | 0.987664 |
Target: 5'- aCACGGUGUUUcGGCagaUGCACGCcgccGGa -3' miRNA: 3'- -GUGUUACAGAaCCGgc-ACGUGCGu---CC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 41284 | 0.68 | 0.960984 |
Target: 5'- aCACGGUGUUUUGagaaGCCGUGgAaguCGUAGGc -3' miRNA: 3'- -GUGUUACAGAAC----CGGCACgU---GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195133 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 216968 | 0.68 | 0.970518 |
Target: 5'- uCGCGGgccGUCUUGGCCacgGC-CGCAGc -3' miRNA: 3'- -GUGUUa--CAGAACCGGca-CGuGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 70417 | 0.68 | 0.97302 |
Target: 5'- gGCAuacccguGUGUCUcGG-CGUGCACGUAGc -3' miRNA: 3'- gUGU-------UACAGAaCCgGCACGUGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 61282 | 0.68 | 0.973288 |
Target: 5'- gCGCGcgGcCgaGGCCGUGUACacgcuuucgaGCAGGc -3' miRNA: 3'- -GUGUuaCaGaaCCGGCACGUG----------CGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 80414 | 0.67 | 0.980465 |
Target: 5'- aCACcuUGguggcGGCCGUGCugGCcGGa -3' miRNA: 3'- -GUGuuACagaa-CCGGCACGugCGuCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 94244 | 0.67 | 0.980465 |
Target: 5'- gGCAggGUUccGGCCGUGC-UGCGGu -3' miRNA: 3'- gUGUuaCAGaaCCGGCACGuGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 196343 | 0.66 | 0.987513 |
Target: 5'- gACGGUGggCgacaaggccGGCCaucccgagggucuGUGCGCGCAGGa -3' miRNA: 3'- gUGUUACa-Gaa-------CCGG-------------CACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 106163 | 0.69 | 0.953555 |
Target: 5'- gCGCAGauaccgGGCgCGUGCACGUAGGc -3' miRNA: 3'- -GUGUUacagaaCCG-GCACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195061 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195016 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 216854 | 0.73 | 0.803359 |
Target: 5'- gGCAugugGUCaaaaGGCCGgcagGCGCGCAGGc -3' miRNA: 3'- gUGUua--CAGaa--CCGGCa---CGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 80353 | 0.72 | 0.845442 |
Target: 5'- gGCGAguuaGUCUUGGCCaUGCAUaCGGGg -3' miRNA: 3'- gUGUUa---CAGAACCGGcACGUGcGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 118026 | 0.72 | 0.845442 |
Target: 5'- gACGGUGgaagUGGCgG-GCACGCGGGu -3' miRNA: 3'- gUGUUACaga-ACCGgCaCGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 89596 | 0.71 | 0.875725 |
Target: 5'- cCACAAaGUCgcuuuuGCCGUGCGCGCuaaAGGu -3' miRNA: 3'- -GUGUUaCAGaac---CGGCACGUGCG---UCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 111483 | 0.71 | 0.875725 |
Target: 5'- aUACGAUGUCaUUGGCCGcUGCGaa-GGGa -3' miRNA: 3'- -GUGUUACAG-AACCGGC-ACGUgcgUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 71871 | 0.7 | 0.925786 |
Target: 5'- cCACAGUggaGUCgcaGGUgCGUGcCGCGCAGGg -3' miRNA: 3'- -GUGUUA---CAGaa-CCG-GCAC-GUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 34598 | 0.7 | 0.930998 |
Target: 5'- cCGCgGAUGUCguacuuGCCGUGCgccguaGCGCAGGc -3' miRNA: 3'- -GUG-UUACAGaac---CGGCACG------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 199598 | 0.7 | 0.935975 |
Target: 5'- aACAggGgugCUUGGCCGUGgACuucCAGGg -3' miRNA: 3'- gUGUuaCa--GAACCGGCACgUGc--GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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