Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 5' | -53.1 | NC_006273.1 | + | 79686 | 0.76 | 0.648487 |
Target: 5'- gGCGAUgGUCaUGGCCGUGCGCGaagugAGGc -3' miRNA: 3'- gUGUUA-CAGaACCGGCACGUGCg----UCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 235071 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 158201 | 0.68 | 0.970518 |
Target: 5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3' miRNA: 3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 199022 | 0.66 | 0.993009 |
Target: 5'- uGCGGcUGUCgcgcgaccucaggGGCuuCGUGCGCGUGGGg -3' miRNA: 3'- gUGUU-ACAGaa-----------CCG--GCACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 165094 | 0.7 | 0.908737 |
Target: 5'- ---uGUGUCUUGG-CGUcGCACGCGGa -3' miRNA: 3'- guguUACAGAACCgGCA-CGUGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 169356 | 0.7 | 0.935975 |
Target: 5'- gGCGAUGagCgccgGGCCGUGCugacgucCGUAGGg -3' miRNA: 3'- gUGUUACa-Gaa--CCGGCACGu------GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 168 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 234954 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 82756 | 0.69 | 0.953555 |
Target: 5'- gCGCAAuuUGUacgcgcGGCCGUGCA-GCGGGc -3' miRNA: 3'- -GUGUU--ACAgaa---CCGGCACGUgCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 240 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 196666 | 0.68 | 0.960984 |
Target: 5'- aACGGUGaaUCUUGGCgUGgcGCACGCAGcGg -3' miRNA: 3'- gUGUUAC--AGAACCG-GCa-CGUGCGUC-C- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 108553 | 0.69 | 0.945227 |
Target: 5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3' miRNA: 3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 157835 | 0.74 | 0.776214 |
Target: 5'- gCACGAUGUCgUGGUuagcggCGUGCA-GCAGGu -3' miRNA: 3'- -GUGUUACAGaACCG------GCACGUgCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 145552 | 0.68 | 0.964372 |
Target: 5'- gACGggGUUccgggcGGCgGUGCugGCGGGg -3' miRNA: 3'- gUGUuaCAGaa----CCGgCACGugCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 154401 | 0.74 | 0.785401 |
Target: 5'- uGCGAUGUCUcugaccuggUGGCCGUGCccgACGaCAGc -3' miRNA: 3'- gUGUUACAGA---------ACCGGCACG---UGC-GUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 234999 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 178080 | 0.68 | 0.967548 |
Target: 5'- aGCGAgaauucGGCCGUGCACGUGGa -3' miRNA: 3'- gUGUUacagaaCCGGCACGUGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 24416 | 0.68 | 0.970518 |
Target: 5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3' miRNA: 3'- gUGuUACagaACCGGCACGugC-GuCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 173723 | 0.71 | 0.896209 |
Target: 5'- cCGCuuUGUCcgUGGcCCGUGCcCGCAGc -3' miRNA: 3'- -GUGuuACAGa-ACC-GGCACGuGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 123 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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