Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 5' | -53.1 | NC_006273.1 | + | 24416 | 0.68 | 0.970518 |
Target: 5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3' miRNA: 3'- gUGuUACagaACCGGCACGugC-GuCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 143175 | 0.66 | 0.989092 |
Target: 5'- aCACAGg--UUUGGCgccCGUagGCGCGCGGGu -3' miRNA: 3'- -GUGUUacaGAACCG---GCA--CGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 108553 | 0.69 | 0.945227 |
Target: 5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3' miRNA: 3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 158201 | 0.68 | 0.970518 |
Target: 5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3' miRNA: 3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 156877 | 0.67 | 0.984377 |
Target: 5'- -cCGGUGUCcgGGCgGcGC-CGCAGGg -3' miRNA: 3'- guGUUACAGaaCCGgCaCGuGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 169918 | 0.66 | 0.991561 |
Target: 5'- -cCAGUGUUUUGGacguCGUGgACGgGGGu -3' miRNA: 3'- guGUUACAGAACCg---GCACgUGCgUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 240 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 174421 | 0.67 | 0.975865 |
Target: 5'- gCACAcUGgcagacCUUGGUCGacguUGCACGCGGa -3' miRNA: 3'- -GUGUuACa-----GAACCGGC----ACGUGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 41284 | 0.68 | 0.960984 |
Target: 5'- aCACGGUGUUUUGagaaGCCGUGgAaguCGUAGGc -3' miRNA: 3'- -GUGUUACAGAAC----CGGCACgU---GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 80353 | 0.72 | 0.845442 |
Target: 5'- gGCGAguuaGUCUUGGCCaUGCAUaCGGGg -3' miRNA: 3'- gUGUUa---CAGAACCGGcACGUGcGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 216968 | 0.68 | 0.970518 |
Target: 5'- uCGCGGgccGUCUUGGCCacgGC-CGCAGc -3' miRNA: 3'- -GUGUUa--CAGAACCGGca-CGuGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 207114 | 0.66 | 0.991561 |
Target: 5'- aGCAGUGUgCUccagaagGGCaGUGUaucGCGCAGGu -3' miRNA: 3'- gUGUUACA-GAa------CCGgCACG---UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 111483 | 0.71 | 0.875725 |
Target: 5'- aUACGAUGUCaUUGGCCGcUGCGaa-GGGa -3' miRNA: 3'- -GUGUUACAG-AACCGGC-ACGUgcgUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 188964 | 0.66 | 0.991997 |
Target: 5'- gGCGGUGuuuUCUUGGUgggcggCGUGCucagguucuuacgcgGCGCGGGu -3' miRNA: 3'- gUGUUAC---AGAACCG------GCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 71871 | 0.7 | 0.925786 |
Target: 5'- cCACAGUggaGUCgcaGGUgCGUGcCGCGCAGGg -3' miRNA: 3'- -GUGUUA---CAGaa-CCG-GCAC-GUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 217384 | 0.66 | 0.991997 |
Target: 5'- gCGCAGUG-CUacggugguucccuggUGGCgcUGCACGUAGGu -3' miRNA: 3'- -GUGUUACaGA---------------ACCGgcACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 53774 | 0.66 | 0.992312 |
Target: 5'- uGCAccGUCUgGGCCGggcaauccugguguUGCGCGCGa- -3' miRNA: 3'- gUGUuaCAGAaCCGGC--------------ACGUGCGUcc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 39974 | 0.66 | 0.987664 |
Target: 5'- aCACGGUGUUUcGGCagaUGCACGCcgccGGa -3' miRNA: 3'- -GUGUUACAGAaCCGgc-ACGUGCGu---CC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195133 | 0.68 | 0.96876 |
Target: 5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3' miRNA: 3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 106163 | 0.69 | 0.953555 |
Target: 5'- gCGCAGauaccgGGCgCGUGCACGUAGGc -3' miRNA: 3'- -GUGUUacagaaCCG-GCACGUGCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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