miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 5' -53.1 NC_006273.1 + 41284 0.68 0.960984
Target:  5'- aCACGGUGUUUUGagaaGCCGUGgAaguCGUAGGc -3'
miRNA:   3'- -GUGUUACAGAAC----CGGCACgU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 217384 0.66 0.991997
Target:  5'- gCGCAGUG-CUacggugguucccuggUGGCgcUGCACGUAGGu -3'
miRNA:   3'- -GUGUUACaGA---------------ACCGgcACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 188964 0.66 0.991997
Target:  5'- gGCGGUGuuuUCUUGGUgggcggCGUGCucagguucuuacgcgGCGCGGGu -3'
miRNA:   3'- gUGUUAC---AGAACCG------GCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 207114 0.66 0.991561
Target:  5'- aGCAGUGUgCUccagaagGGCaGUGUaucGCGCAGGu -3'
miRNA:   3'- gUGUUACA-GAa------CCGgCACG---UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 196343 0.66 0.987513
Target:  5'- gACGGUGggCgacaaggccGGCCaucccgagggucuGUGCGCGCAGGa -3'
miRNA:   3'- gUGUUACa-Gaa-------CCGG-------------CACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 39974 0.66 0.987664
Target:  5'- aCACGGUGUUUcGGCagaUGCACGCcgccGGa -3'
miRNA:   3'- -GUGUUACAGAaCCGgc-ACGUGCGu---CC- -5'
30056 5' -53.1 NC_006273.1 + 94244 0.67 0.980465
Target:  5'- gGCAggGUUccGGCCGUGC-UGCGGu -3'
miRNA:   3'- gUGUuaCAGaaCCGGCACGuGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 80414 0.67 0.980465
Target:  5'- aCACcuUGguggcGGCCGUGCugGCcGGa -3'
miRNA:   3'- -GUGuuACagaa-CCGGCACGugCGuCC- -5'
30056 5' -53.1 NC_006273.1 + 61282 0.68 0.973288
Target:  5'- gCGCGcgGcCgaGGCCGUGUACacgcuuucgaGCAGGc -3'
miRNA:   3'- -GUGUuaCaGaaCCGGCACGUG----------CGUCC- -5'
30056 5' -53.1 NC_006273.1 + 70417 0.68 0.97302
Target:  5'- gGCAuacccguGUGUCUcGG-CGUGCACGUAGc -3'
miRNA:   3'- gUGU-------UACAGAaCCgGCACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 216968 0.68 0.970518
Target:  5'- uCGCGGgccGUCUUGGCCacgGC-CGCAGc -3'
miRNA:   3'- -GUGUUa--CAGAACCGGca-CGuGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 195133 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 57337 1.1 0.007636
Target:  5'- gCACAAUGUCUUGGCCGUGCACGCAGGc -3'
miRNA:   3'- -GUGUUACAGAACCGGCACGUGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.