miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30062 3' -57.7 NC_006273.1 + 123162 0.66 0.916125
Target:  5'- uGACGACAGCGuCAGGucCGGCgGUGauuCGUUc -3'
miRNA:   3'- -UUGCUGUCGU-GUCU--GCCG-CACg--GCAG- -5'
30062 3' -57.7 NC_006273.1 + 229554 0.66 0.916125
Target:  5'- -uUGGCGGCgACAGauGCGGCGguuacaCCGUCu -3'
miRNA:   3'- uuGCUGUCG-UGUC--UGCCGCac----GGCAG- -5'
30062 3' -57.7 NC_006273.1 + 178828 0.66 0.916125
Target:  5'- cGGCGGCGGCGgAGGaggaGGCG-GCgGUUu -3'
miRNA:   3'- -UUGCUGUCGUgUCUg---CCGCaCGgCAG- -5'
30062 3' -57.7 NC_006273.1 + 137476 0.66 0.916125
Target:  5'- -cUGGguGCugcCGGGCGGCuuUGCCGUCu -3'
miRNA:   3'- uuGCUguCGu--GUCUGCCGc-ACGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 178682 0.66 0.916125
Target:  5'- cACGACcGCGguGGCGGCG-GUgGUUc -3'
miRNA:   3'- uUGCUGuCGUguCUGCCGCaCGgCAG- -5'
30062 3' -57.7 NC_006273.1 + 133720 0.66 0.916125
Target:  5'- uACGAUucuGGCGuuGGCcgaguaGCGUGCCGUCg -3'
miRNA:   3'- uUGCUG---UCGUguCUGc-----CGCACGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 33023 0.66 0.915562
Target:  5'- uGGCGACcGCGCuGGCGGCGcauaaaaucgUcuaaauucaaaccGCCGUCg -3'
miRNA:   3'- -UUGCUGuCGUGuCUGCCGC----------A-------------CGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 193213 0.66 0.915562
Target:  5'- gAACGgaGCAGCuaccGCuGGCGGCGgcggcguuaaugcUGCCGUUg -3'
miRNA:   3'- -UUGC--UGUCG----UGuCUGCCGC-------------ACGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 113185 0.66 0.910398
Target:  5'- --aGGCAGCAUGGAguCGcGCGgucGCCGUUg -3'
miRNA:   3'- uugCUGUCGUGUCU--GC-CGCa--CGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 215402 0.66 0.910398
Target:  5'- cGACGGCAGUuCGGgugauACGGCGUgauGCUGUg -3'
miRNA:   3'- -UUGCUGUCGuGUC-----UGCCGCA---CGGCAg -5'
30062 3' -57.7 NC_006273.1 + 82290 0.66 0.910398
Target:  5'- gGGCGugGGC-C--GCGGCGUggaugacgagGCCGUCa -3'
miRNA:   3'- -UUGCugUCGuGucUGCCGCA----------CGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 163709 0.66 0.910398
Target:  5'- cGGCGGCGGUGguGGCGGUGguagaaacaGCCGg- -3'
miRNA:   3'- -UUGCUGUCGUguCUGCCGCa--------CGGCag -5'
30062 3' -57.7 NC_006273.1 + 160282 0.66 0.910398
Target:  5'- uAGCGGCGGCgACGGAgcUGGUGgacgggGCCGg- -3'
miRNA:   3'- -UUGCUGUCG-UGUCU--GCCGCa-----CGGCag -5'
30062 3' -57.7 NC_006273.1 + 116976 0.66 0.910398
Target:  5'- -gUGGCAGCGCu-GCGGCagcacUGCUGUCg -3'
miRNA:   3'- uuGCUGUCGUGucUGCCGc----ACGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 145081 0.66 0.910398
Target:  5'- gGGCGACGcCGCuGGCGGCGgcGCUGaUCa -3'
miRNA:   3'- -UUGCUGUcGUGuCUGCCGCa-CGGC-AG- -5'
30062 3' -57.7 NC_006273.1 + 124435 0.66 0.910398
Target:  5'- uGCGGCcGCGCGGGCGuGCGcggcucGCCGa- -3'
miRNA:   3'- uUGCUGuCGUGUCUGC-CGCa-----CGGCag -5'
30062 3' -57.7 NC_006273.1 + 163630 0.66 0.905054
Target:  5'- cGCGACAGCuguuuggaaagcgaAGACGGCGccccGCUGUg -3'
miRNA:   3'- uUGCUGUCGug------------UCUGCCGCa---CGGCAg -5'
30062 3' -57.7 NC_006273.1 + 39583 0.66 0.904449
Target:  5'- cGCGACcgaggGGCGgGGggcGCGGCGacaUGCCGUUg -3'
miRNA:   3'- uUGCUG-----UCGUgUC---UGCCGC---ACGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 234476 0.66 0.904449
Target:  5'- cGCGACcgaggGGCGgGGggcGCGGCGacaUGCCGUUg -3'
miRNA:   3'- uUGCUG-----UCGUgUC---UGCCGC---ACGGCAG- -5'
30062 3' -57.7 NC_006273.1 + 149430 0.66 0.904449
Target:  5'- -cCGAUGGCACGGGgGGCGacgGCCc-- -3'
miRNA:   3'- uuGCUGUCGUGUCUgCCGCa--CGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.