miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30062 5' -55.7 NC_006273.1 + 122024 0.66 0.978395
Target:  5'- uCGAgUCGGG-CGUguACUG-CGACa -3'
miRNA:   3'- cGCUgAGCCCuGCGguUGACuGCUGc -5'
30062 5' -55.7 NC_006273.1 + 71884 0.66 0.978395
Target:  5'- uGCGGCggcaaCGGG-CGCgAcACcGGCGACGg -3'
miRNA:   3'- -CGCUGa----GCCCuGCGgU-UGaCUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 207299 0.66 0.978395
Target:  5'- gGUGACUCGacGGAuCGgCggUggUGACGGCGg -3'
miRNA:   3'- -CGCUGAGC--CCU-GCgGuuG--ACUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 197776 0.66 0.978395
Target:  5'- uGgGucCUCGGGGacaGCCGACccGACGAUa -3'
miRNA:   3'- -CgCu-GAGCCCUg--CGGUUGa-CUGCUGc -5'
30062 5' -55.7 NC_006273.1 + 189003 0.66 0.978395
Target:  5'- cGCGGCgCGGGuaucgGCGUCGGgggcCUGuGCGACGa -3'
miRNA:   3'- -CGCUGaGCCC-----UGCGGUU----GAC-UGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 152611 0.66 0.978395
Target:  5'- gGUGugUCucGGugGCCcGCUGcACGGCc -3'
miRNA:   3'- -CGCugAGc-CCugCGGuUGAC-UGCUGc -5'
30062 5' -55.7 NC_006273.1 + 70949 0.66 0.978395
Target:  5'- aGCGGC-CGcGGcCGCaGAC-GACGACGg -3'
miRNA:   3'- -CGCUGaGC-CCuGCGgUUGaCUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 142058 0.66 0.978395
Target:  5'- uCGuCUCGcGGcagcgcCGCCAGC-GGCGACGg -3'
miRNA:   3'- cGCuGAGC-CCu-----GCGGUUGaCUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 7621 0.66 0.978395
Target:  5'- -aGGC-CGGcGACGUUAACUGcuacagcuGCGGCGg -3'
miRNA:   3'- cgCUGaGCC-CUGCGGUUGAC--------UGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 71998 0.66 0.978395
Target:  5'- gGCGGucCUCGcGACGCugcugUggUUGACGACGa -3'
miRNA:   3'- -CGCU--GAGCcCUGCG-----GuuGACUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 144213 0.66 0.976104
Target:  5'- uGCGACgacCGGcACGgCGGCUcgGACGACu -3'
miRNA:   3'- -CGCUGa--GCCcUGCgGUUGA--CUGCUGc -5'
30062 5' -55.7 NC_006273.1 + 160400 0.66 0.976104
Target:  5'- gGCGA-UCGGcGcCGCUGAUUGAgGACGc -3'
miRNA:   3'- -CGCUgAGCC-CuGCGGUUGACUgCUGC- -5'
30062 5' -55.7 NC_006273.1 + 79317 0.66 0.976104
Target:  5'- cGCGAC-CGauGCGCguaauGCUGGCGGCGa -3'
miRNA:   3'- -CGCUGaGCccUGCGgu---UGACUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 20380 0.66 0.976104
Target:  5'- cGCGACccggcggugCGGGAcuccgucaacuaCGCCAacaACUGACGGu- -3'
miRNA:   3'- -CGCUGa--------GCCCU------------GCGGU---UGACUGCUgc -5'
30062 5' -55.7 NC_006273.1 + 206662 0.66 0.975866
Target:  5'- gGCGcCUCGGG-CGCCAugUaccuaugGAcCGACc -3'
miRNA:   3'- -CGCuGAGCCCuGCGGUugA-------CU-GCUGc -5'
30062 5' -55.7 NC_006273.1 + 201283 0.66 0.97364
Target:  5'- uGCGGCgaCGGG-CG-CGAC-GACGGCGg -3'
miRNA:   3'- -CGCUGa-GCCCuGCgGUUGaCUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 91740 0.66 0.972867
Target:  5'- cGUGAUguUCGGGAcggcuuugcgucacCGCCAACUaACGuCGg -3'
miRNA:   3'- -CGCUG--AGCCCU--------------GCGGUUGAcUGCuGC- -5'
30062 5' -55.7 NC_006273.1 + 149488 0.66 0.970997
Target:  5'- gGCGAUgucgGGGACGgguaCGACUuuGAUGACGg -3'
miRNA:   3'- -CGCUGag--CCCUGCg---GUUGA--CUGCUGC- -5'
30062 5' -55.7 NC_006273.1 + 173307 0.66 0.970997
Target:  5'- cGCGgcGCUCGGucGACGCguuguuACUGGCGAUc -3'
miRNA:   3'- -CGC--UGAGCC--CUGCGgu----UGACUGCUGc -5'
30062 5' -55.7 NC_006273.1 + 38091 0.66 0.970997
Target:  5'- cGCGGcCUCGgcggcGGGCGCCGACUcGCGccccaGCGc -3'
miRNA:   3'- -CGCU-GAGC-----CCUGCGGUUGAcUGC-----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.