miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30067 3' -54.3 NC_006273.1 + 193584 0.66 0.985237
Target:  5'- uGGCUCUGU----UGGAAGUgccgcguugGGCGGGCa -3'
miRNA:   3'- -UCGAGACAgacuGCCUUCG---------CUGCUCG- -5'
30067 3' -54.3 NC_006273.1 + 173976 0.66 0.985237
Target:  5'- cAGCUauuaUGUCUGguggcgcgcGCGGcAGCaACGAGUa -3'
miRNA:   3'- -UCGAg---ACAGAC---------UGCCuUCGcUGCUCG- -5'
30067 3' -54.3 NC_006273.1 + 113669 0.66 0.985237
Target:  5'- uGGCUCUGUUggccgUGACcGAgAGCGuGCGcAGCg -3'
miRNA:   3'- -UCGAGACAG-----ACUGcCU-UCGC-UGC-UCG- -5'
30067 3' -54.3 NC_006273.1 + 1214 0.66 0.983276
Target:  5'- uGGCgagCUGUUgcgUGGCGGGGacgggggacucuuGCGGCGGGg -3'
miRNA:   3'- -UCGa--GACAG---ACUGCCUU-------------CGCUGCUCg -5'
30067 3' -54.3 NC_006273.1 + 41152 0.66 0.983276
Target:  5'- uGGCgagCUGUUgcgUGGCGGGGacgggggacucuuGCGGCGGGg -3'
miRNA:   3'- -UCGa--GACAG---ACUGCCUU-------------CGCUGCUCg -5'
30067 3' -54.3 NC_006273.1 + 151246 0.66 0.979434
Target:  5'- cGCUCcucGUCUGcCGuGAucaAGCGGCGcGGCg -3'
miRNA:   3'- uCGAGa--CAGACuGC-CU---UCGCUGC-UCG- -5'
30067 3' -54.3 NC_006273.1 + 1955 0.66 0.977167
Target:  5'- uGGCUggGUUgcgcGGCGGGgccGGCGACGGGg -3'
miRNA:   3'- -UCGAgaCAGa---CUGCCU---UCGCUGCUCg -5'
30067 3' -54.3 NC_006273.1 + 196847 0.66 0.977167
Target:  5'- uGGCUggGUUgcgcGGCGGGgccGGCGACGGGg -3'
miRNA:   3'- -UCGAgaCAGa---CUGCCU---UCGCUGCUCg -5'
30067 3' -54.3 NC_006273.1 + 162387 0.66 0.977167
Target:  5'- uGGCggUGgCggcGGCGGGAGCGGCGgucAGCa -3'
miRNA:   3'- -UCGagACaGa--CUGCCUUCGCUGC---UCG- -5'
30067 3' -54.3 NC_006273.1 + 219005 0.66 0.97693
Target:  5'- aGGC---GUCUGAUGGGagaauccAGCGACG-GCa -3'
miRNA:   3'- -UCGagaCAGACUGCCU-------UCGCUGCuCG- -5'
30067 3' -54.3 NC_006273.1 + 185622 0.67 0.97472
Target:  5'- gAGCg--GcCcGGCGGAAGCucGAUGAGCa -3'
miRNA:   3'- -UCGagaCaGaCUGCCUUCG--CUGCUCG- -5'
30067 3' -54.3 NC_006273.1 + 149749 0.67 0.97472
Target:  5'- cGGCgCUGUU--ACGGGAGCGcguGAGCg -3'
miRNA:   3'- -UCGaGACAGacUGCCUUCGCug-CUCG- -5'
30067 3' -54.3 NC_006273.1 + 22241 0.67 0.97472
Target:  5'- ----gUGUCagaUGACGGgcGcCGGCGAGCg -3'
miRNA:   3'- ucgagACAG---ACUGCCuuC-GCUGCUCG- -5'
30067 3' -54.3 NC_006273.1 + 131142 0.67 0.972088
Target:  5'- aAGCUCa-UCggcggGAUGGAguuugccgaGGUGACGGGCg -3'
miRNA:   3'- -UCGAGacAGa----CUGCCU---------UCGCUGCUCG- -5'
30067 3' -54.3 NC_006273.1 + 161771 0.67 0.971261
Target:  5'- uGGCUCUGgcgGGagaaGGGaaggcggcagcggcAGCGGCGGGCc -3'
miRNA:   3'- -UCGAGACagaCUg---CCU--------------UCGCUGCUCG- -5'
30067 3' -54.3 NC_006273.1 + 145566 0.67 0.969264
Target:  5'- cGGCggUG-CUGGCGGggGUGGuggacgggacgUGAGCg -3'
miRNA:   3'- -UCGagACaGACUGCCuuCGCU-----------GCUCG- -5'
30067 3' -54.3 NC_006273.1 + 41046 0.67 0.969264
Target:  5'- uGCUCgggcGUCUGACugGGAGGCGAaaUGAcGUc -3'
miRNA:   3'- uCGAGa---CAGACUG--CCUUCGCU--GCU-CG- -5'
30067 3' -54.3 NC_006273.1 + 7988 0.67 0.967475
Target:  5'- uAGCUCcuucuuuuccccaggUGgugcgaCUGACGGuGGCGGCG-GCa -3'
miRNA:   3'- -UCGAG---------------ACa-----GACUGCCuUCGCUGCuCG- -5'
30067 3' -54.3 NC_006273.1 + 139579 0.67 0.966242
Target:  5'- gAGCggagGUUaGGCGGcAGCGGCGAGa -3'
miRNA:   3'- -UCGaga-CAGaCUGCCuUCGCUGCUCg -5'
30067 3' -54.3 NC_006273.1 + 143910 0.67 0.965929
Target:  5'- gAGCUCacccggcUG-CUGGCGGuuuGGGaCGAUGAGCc -3'
miRNA:   3'- -UCGAG-------ACaGACUGCC---UUC-GCUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.