miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30067 5' -56.5 NC_006273.1 + 80832 0.66 0.956325
Target:  5'- aCGACGUgGCcgcgggGCGC-AGCGCCuccuuGGUGAUc -3'
miRNA:   3'- -GCUGUAgCG------CGCGaUCGCGG-----CUACUG- -5'
30067 5' -56.5 NC_006273.1 + 202682 0.66 0.956325
Target:  5'- aGACGUggaGCGCGCU-GCGCag--GGCa -3'
miRNA:   3'- gCUGUAg--CGCGCGAuCGCGgcuaCUG- -5'
30067 5' -56.5 NC_006273.1 + 122108 0.66 0.956325
Target:  5'- aCGuCGUCGCGCacCUGGC-CCGAcaGACg -3'
miRNA:   3'- -GCuGUAGCGCGc-GAUCGcGGCUa-CUG- -5'
30067 5' -56.5 NC_006273.1 + 15681 0.66 0.956325
Target:  5'- aCGACgcguucGUCGaCGCGCgagGGCGCagagcgGGUGAUu -3'
miRNA:   3'- -GCUG------UAGC-GCGCGa--UCGCGg-----CUACUG- -5'
30067 5' -56.5 NC_006273.1 + 87638 0.66 0.956325
Target:  5'- aCGGUGUCGCcugGUGCUGcuGUGUCGGUGGCu -3'
miRNA:   3'- -GCUGUAGCG---CGCGAU--CGCGGCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 70101 0.66 0.952536
Target:  5'- gGACAcagCGcCGCGCUGGaUGaCGGUGAUg -3'
miRNA:   3'- gCUGUa--GC-GCGCGAUC-GCgGCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 95363 0.66 0.952536
Target:  5'- cCGAC-UCGCGCGgaAuuaCGuuGGUGACc -3'
miRNA:   3'- -GCUGuAGCGCGCgaUc--GCggCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 34788 0.66 0.952536
Target:  5'- uCGGCGUCagguagGCGCGCaGGaaCUGGUGACa -3'
miRNA:   3'- -GCUGUAG------CGCGCGaUCgcGGCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 100387 0.66 0.952536
Target:  5'- aGACGUCGuCGCGUagccaGGCGCUcauuUGACc -3'
miRNA:   3'- gCUGUAGC-GCGCGa----UCGCGGcu--ACUG- -5'
30067 5' -56.5 NC_006273.1 + 162369 0.66 0.952536
Target:  5'- aGGCggCG-GCGCUAGUGguggCGGUGGCg -3'
miRNA:   3'- gCUGuaGCgCGCGAUCGCg---GCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 99671 0.66 0.948532
Target:  5'- gGACAcCG-GCGaggGGCGCCGGggGACu -3'
miRNA:   3'- gCUGUaGCgCGCga-UCGCGGCUa-CUG- -5'
30067 5' -56.5 NC_006273.1 + 128093 0.66 0.948532
Target:  5'- aGACAgggCGCGgGCUcGUGCagcaccgGGUGGCa -3'
miRNA:   3'- gCUGUa--GCGCgCGAuCGCGg------CUACUG- -5'
30067 5' -56.5 NC_006273.1 + 50659 0.66 0.948532
Target:  5'- aGACGUCGCGU-----UGUCGGUGACg -3'
miRNA:   3'- gCUGUAGCGCGcgaucGCGGCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 136886 0.66 0.948532
Target:  5'- uGGCgcaGUCGCGaGCUgAGCuaCGAUGACc -3'
miRNA:   3'- gCUG---UAGCGCgCGA-UCGcgGCUACUG- -5'
30067 5' -56.5 NC_006273.1 + 168198 0.66 0.948532
Target:  5'- uGAcCAUCuGCGCGUacgUGGCGuuGgcGGCa -3'
miRNA:   3'- gCU-GUAG-CGCGCG---AUCGCggCuaCUG- -5'
30067 5' -56.5 NC_006273.1 + 151736 0.66 0.948532
Target:  5'- -cGCGUCGCGCGCcuuGCGCaCGGc--- -3'
miRNA:   3'- gcUGUAGCGCGCGau-CGCG-GCUacug -5'
30067 5' -56.5 NC_006273.1 + 187134 0.66 0.948532
Target:  5'- uCGACGUCGCuGCcguaGCUAGUGCUc--GGCa -3'
miRNA:   3'- -GCUGUAGCG-CG----CGAUCGCGGcuaCUG- -5'
30067 5' -56.5 NC_006273.1 + 82023 0.66 0.948532
Target:  5'- gGGCA-CGCGCGUgc-CGCCGGccucgGACg -3'
miRNA:   3'- gCUGUaGCGCGCGaucGCGGCUa----CUG- -5'
30067 5' -56.5 NC_006273.1 + 202780 0.66 0.948532
Target:  5'- aCGugAgcCGCGCGCUGcuGCGucaCCGuGUGACg -3'
miRNA:   3'- -GCugUa-GCGCGCGAU--CGC---GGC-UACUG- -5'
30067 5' -56.5 NC_006273.1 + 133474 0.66 0.948532
Target:  5'- aCGGCG--GCGUGCaGGCGCgGAcgcUGGCg -3'
miRNA:   3'- -GCUGUagCGCGCGaUCGCGgCU---ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.