miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30070 3' -53.8 NC_006273.1 + 73422 0.65 0.990984
Target:  5'- aGCCcuGCUGCGUCUUggcgccagccgaaGCCUcgcCGUGCUg -3'
miRNA:   3'- -CGGuuUGGCGCAGGG-------------UGGAu--GCAUGA- -5'
30070 3' -53.8 NC_006273.1 + 145087 0.65 0.990984
Target:  5'- cGCCGcuGGCgGCGgcgcugaUCaCCACCUGCGggGCa -3'
miRNA:   3'- -CGGU--UUGgCGC-------AG-GGUGGAUGCa-UGa -5'
30070 3' -53.8 NC_006273.1 + 45544 0.66 0.989894
Target:  5'- cGCCAuGCCGCagaUgCCACCcgGCGUGg- -3'
miRNA:   3'- -CGGUuUGGCGc--AgGGUGGa-UGCAUga -5'
30070 3' -53.8 NC_006273.1 + 87789 0.66 0.989894
Target:  5'- uGCuCAAACCGCGUCgUgaGCCgcgGCG-GCUc -3'
miRNA:   3'- -CG-GUUUGGCGCAGgG--UGGa--UGCaUGA- -5'
30070 3' -53.8 NC_006273.1 + 200752 0.66 0.989894
Target:  5'- cGCCGcAGCUGUcugGUCCauucaGCCUGCGcUACg -3'
miRNA:   3'- -CGGU-UUGGCG---CAGGg----UGGAUGC-AUGa -5'
30070 3' -53.8 NC_006273.1 + 133203 0.66 0.989894
Target:  5'- aUCGAcGCCGCgGUCUCACCgAgGUGCUc -3'
miRNA:   3'- cGGUU-UGGCG-CAGGGUGGaUgCAUGA- -5'
30070 3' -53.8 NC_006273.1 + 234519 0.66 0.988563
Target:  5'- gGCCAuGGCCGCGga-CACCUccgACGUccACUa -3'
miRNA:   3'- -CGGU-UUGGCGCaggGUGGA---UGCA--UGA- -5'
30070 3' -53.8 NC_006273.1 + 30527 0.66 0.988563
Target:  5'- gGCCGAACCcCGUCagCACCccGCGUcACUu -3'
miRNA:   3'- -CGGUUUGGcGCAGg-GUGGa-UGCA-UGA- -5'
30070 3' -53.8 NC_006273.1 + 23621 0.66 0.988563
Target:  5'- cGCCGAGCC-CGggccugCUCACCauuuauaGCGUGCUc -3'
miRNA:   3'- -CGGUUUGGcGCa-----GGGUGGa------UGCAUGA- -5'
30070 3' -53.8 NC_006273.1 + 121654 0.66 0.988563
Target:  5'- cGCC--GCCGcCGUCgCCACCUcCGgcGCUg -3'
miRNA:   3'- -CGGuuUGGC-GCAG-GGUGGAuGCa-UGA- -5'
30070 3' -53.8 NC_006273.1 + 135063 0.66 0.988563
Target:  5'- cCCAugcACCGCG-CCaugGCCUACGUguGCUc -3'
miRNA:   3'- cGGUu--UGGCGCaGGg--UGGAUGCA--UGA- -5'
30070 3' -53.8 NC_006273.1 + 71663 0.66 0.988563
Target:  5'- uGCUAAACCGcCG-CgCGCCUGC-UGCa -3'
miRNA:   3'- -CGGUUUGGC-GCaGgGUGGAUGcAUGa -5'
30070 3' -53.8 NC_006273.1 + 83621 0.66 0.988139
Target:  5'- cGCCGAACUGUa--CCACCUGCccguguuggaggccGUGCg -3'
miRNA:   3'- -CGGUUUGGCGcagGGUGGAUG--------------CAUGa -5'
30070 3' -53.8 NC_006273.1 + 113228 0.66 0.987101
Target:  5'- uCCGuACUGgGUCCCAUUUcggggcACGUGCUg -3'
miRNA:   3'- cGGUuUGGCgCAGGGUGGA------UGCAUGA- -5'
30070 3' -53.8 NC_006273.1 + 213131 0.66 0.987101
Target:  5'- gGCgGAGCCGCGUCgCuCGCCgGCGc--- -3'
miRNA:   3'- -CGgUUUGGCGCAG-G-GUGGaUGCauga -5'
30070 3' -53.8 NC_006273.1 + 232493 0.66 0.985499
Target:  5'- uGUCAcgacACCGCG-CCaCACCagagGCGUACg -3'
miRNA:   3'- -CGGUu---UGGCGCaGG-GUGGa---UGCAUGa -5'
30070 3' -53.8 NC_006273.1 + 196749 0.66 0.985499
Target:  5'- cGCCGcaccCCGCGUCgCugCUGacggcCGUGCg -3'
miRNA:   3'- -CGGUuu--GGCGCAGgGugGAU-----GCAUGa -5'
30070 3' -53.8 NC_006273.1 + 31997 0.66 0.985499
Target:  5'- uGCgCGAcCCGCGcgccaCCCACCUGCGc--- -3'
miRNA:   3'- -CG-GUUuGGCGCa----GGGUGGAUGCauga -5'
30070 3' -53.8 NC_006273.1 + 166612 0.66 0.985499
Target:  5'- uGCCAGACCGC-UUCCACCg------- -3'
miRNA:   3'- -CGGUUUGGCGcAGGGUGGaugcauga -5'
30070 3' -53.8 NC_006273.1 + 1857 0.66 0.985499
Target:  5'- cGCCGcaccCCGCGUCgCugCUGacggcCGUGCg -3'
miRNA:   3'- -CGGUuu--GGCGCAGgGugGAU-----GCAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.