miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30070 5' -57.4 NC_006273.1 + 202599 0.66 0.931999
Target:  5'- aUCAGC-CGUgagaacuuugUGGUGCGCGCCGc---- -3'
miRNA:   3'- -AGUUGaGCA----------ACCGCGCGCGGCaccag -5'
30070 5' -57.4 NC_006273.1 + 158219 0.66 0.931999
Target:  5'- gCAGCgugaggCGcgGGCGCGCGUCGgccGG-Cg -3'
miRNA:   3'- aGUUGa-----GCaaCCGCGCGCGGCa--CCaG- -5'
30070 5' -57.4 NC_006273.1 + 83338 0.66 0.931999
Target:  5'- cCGGCguggUGggacccGGCG-GCGCCGUGGUg -3'
miRNA:   3'- aGUUGa---GCaa----CCGCgCGCGGCACCAg -5'
30070 5' -57.4 NC_006273.1 + 204778 0.66 0.931999
Target:  5'- --cGCUCGguuucUUGGCG-GCGCCGgugccgccGGUCu -3'
miRNA:   3'- aguUGAGC-----AACCGCgCGCGGCa-------CCAG- -5'
30070 5' -57.4 NC_006273.1 + 188781 0.66 0.931999
Target:  5'- gUCGGCUcCGUcGGCGUGCGg---GGUCg -3'
miRNA:   3'- -AGUUGA-GCAaCCGCGCGCggcaCCAG- -5'
30070 5' -57.4 NC_006273.1 + 185470 0.66 0.926992
Target:  5'- cCAGCUcCGUUcGCGCaGCGCCcUGGg- -3'
miRNA:   3'- aGUUGA-GCAAcCGCG-CGCGGcACCag -5'
30070 5' -57.4 NC_006273.1 + 75566 0.66 0.921764
Target:  5'- aCAACUgCGgcgacuGUGCGCGCCGcUGGcCa -3'
miRNA:   3'- aGUUGA-GCaac---CGCGCGCGGC-ACCaG- -5'
30070 5' -57.4 NC_006273.1 + 101943 0.66 0.916315
Target:  5'- aCAGCgaaaaucccgCGU--GCGCGCGCCGUcGcGUCg -3'
miRNA:   3'- aGUUGa---------GCAacCGCGCGCGGCA-C-CAG- -5'
30070 5' -57.4 NC_006273.1 + 164274 0.66 0.916315
Target:  5'- -aAACUgGUgcUGGCG-GCGCCG-GGUg -3'
miRNA:   3'- agUUGAgCA--ACCGCgCGCGGCaCCAg -5'
30070 5' -57.4 NC_006273.1 + 76534 0.66 0.915758
Target:  5'- gUCGccGCUCGgcgcGGCgcacgaggacgugGCGCGCUGUGGa- -3'
miRNA:   3'- -AGU--UGAGCaa--CCG-------------CGCGCGGCACCag -5'
30070 5' -57.4 NC_006273.1 + 158648 0.66 0.915758
Target:  5'- aCGGcCUCGUUGGUGaCGCggauguuGCCGgcgcaugcgGGUCg -3'
miRNA:   3'- aGUU-GAGCAACCGC-GCG-------CGGCa--------CCAG- -5'
30070 5' -57.4 NC_006273.1 + 127180 0.66 0.914637
Target:  5'- gCGGCUCGUcggcauccaUGGCGCccaaacGCgguacguccgaaacGCCGUGGUg -3'
miRNA:   3'- aGUUGAGCA---------ACCGCG------CG--------------CGGCACCAg -5'
30070 5' -57.4 NC_006273.1 + 144451 0.66 0.910645
Target:  5'- gCGGCUCGcacuacacgGGCucGCGCGCCG-GcGUCu -3'
miRNA:   3'- aGUUGAGCaa-------CCG--CGCGCGGCaC-CAG- -5'
30070 5' -57.4 NC_006273.1 + 41864 0.66 0.910645
Target:  5'- -aAACUCugcGGCGCGaugauaucuuCGUCGUGGUCc -3'
miRNA:   3'- agUUGAGcaaCCGCGC----------GCGGCACCAG- -5'
30070 5' -57.4 NC_006273.1 + 163148 0.67 0.904756
Target:  5'- gUCGACUCaaGUgcgagcgccaucUGGaUGCGCgcucgcuggugGCCGUGGUCu -3'
miRNA:   3'- -AGUUGAG--CA------------ACC-GCGCG-----------CGGCACCAG- -5'
30070 5' -57.4 NC_006273.1 + 48582 0.67 0.904756
Target:  5'- gCGGCaugcCGUUGGCG-GCGCCG-GGa- -3'
miRNA:   3'- aGUUGa---GCAACCGCgCGCGGCaCCag -5'
30070 5' -57.4 NC_006273.1 + 50023 0.67 0.89865
Target:  5'- cCGGCUCGgaUGGCGaUGCaGCCGUaGGcCa -3'
miRNA:   3'- aGUUGAGCa-ACCGC-GCG-CGGCA-CCaG- -5'
30070 5' -57.4 NC_006273.1 + 149283 0.67 0.89865
Target:  5'- cUCGGC-CGaagUGuGCGUGCGgaCUGUGGUCg -3'
miRNA:   3'- -AGUUGaGCa--AC-CGCGCGC--GGCACCAG- -5'
30070 5' -57.4 NC_006273.1 + 152874 0.67 0.89865
Target:  5'- -aGGC-CGUUGGCGUagccauugGgGCCGUGGg- -3'
miRNA:   3'- agUUGaGCAACCGCG--------CgCGGCACCag -5'
30070 5' -57.4 NC_006273.1 + 153392 0.67 0.894883
Target:  5'- gUCGAC-CGUUGGCccuucuuucccuuccGCGCGCUGcucGUCa -3'
miRNA:   3'- -AGUUGaGCAACCG---------------CGCGCGGCac-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.