miRNA display CGI


Results 1 - 20 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 3' -52.9 NC_006273.1 + 47430 0.65 0.994413
Target:  5'- ---cCGCGACu-CGUACgacgucgucgaacgCGCUGCUGCc -3'
miRNA:   3'- acacGCGCUGuuGCAUG--------------GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 1220 0.66 0.994169
Target:  5'- --cGCGCGGCGuuucuggccaacagcACGgGCCGCgccaUGCg -3'
miRNA:   3'- acaCGCGCUGU---------------UGCaUGGCGaug-ACG- -5'
30074 3' -52.9 NC_006273.1 + 196113 0.66 0.994169
Target:  5'- --cGCGCGGCGuuucuggccaacagcACGgGCCGCgccaUGCg -3'
miRNA:   3'- acaCGCGCUGU---------------UGCaUGGCGaug-ACG- -5'
30074 3' -52.9 NC_006273.1 + 43908 0.66 0.993831
Target:  5'- --cGCGCG-CAGuCGUACCGCUccACcuauauaauuuUGCu -3'
miRNA:   3'- acaCGCGCuGUU-GCAUGGCGA--UG-----------ACG- -5'
30074 3' -52.9 NC_006273.1 + 53850 0.66 0.993831
Target:  5'- aGUGcCGUGACAGcCGUgGCC-CUGCaGCu -3'
miRNA:   3'- aCAC-GCGCUGUU-GCA-UGGcGAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 40849 0.66 0.993831
Target:  5'- --aGCGUGGCGG-GUACCGUcgACgGCg -3'
miRNA:   3'- acaCGCGCUGUUgCAUGGCGa-UGaCG- -5'
30074 3' -52.9 NC_006273.1 + 164572 0.66 0.993831
Target:  5'- cGUGC-CGAaGGCcagGCCGCUggcGCUGCc -3'
miRNA:   3'- aCACGcGCUgUUGca-UGGCGA---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 76433 0.66 0.993831
Target:  5'- -cUGCGCGA--GCuGUACCGCcgcgucgucucgUACUGUc -3'
miRNA:   3'- acACGCGCUguUG-CAUGGCG------------AUGACG- -5'
30074 3' -52.9 NC_006273.1 + 146801 0.66 0.993831
Target:  5'- --gGCGUGcCGGCGcccaugGCCGCcACUGUg -3'
miRNA:   3'- acaCGCGCuGUUGCa-----UGGCGaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 91975 0.66 0.993831
Target:  5'- --cGCGCGGCAG---GCCGCgccgGCgUGCu -3'
miRNA:   3'- acaCGCGCUGUUgcaUGGCGa---UG-ACG- -5'
30074 3' -52.9 NC_006273.1 + 74723 0.66 0.993831
Target:  5'- --cGCGCGGCAGCau-CgGCUcgaACUGUa -3'
miRNA:   3'- acaCGCGCUGUUGcauGgCGA---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 100762 0.66 0.993831
Target:  5'- cGUcGUGUGACAGCaGgaugcgACCGCgcgGCUGa -3'
miRNA:   3'- aCA-CGCGCUGUUG-Ca-----UGGCGa--UGACg -5'
30074 3' -52.9 NC_006273.1 + 15697 0.66 0.993744
Target:  5'- --cGCGCGAgGGCGcagagcgggugauUACCGCccUGgUGCa -3'
miRNA:   3'- acaCGCGCUgUUGC-------------AUGGCG--AUgACG- -5'
30074 3' -52.9 NC_006273.1 + 110860 0.66 0.993656
Target:  5'- cGUGCGCaaguuagcgcuagagGACAGCuccaUGCUGCUcgucaagugccaggaGCUGCu -3'
miRNA:   3'- aCACGCG---------------CUGUUGc---AUGGCGA---------------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 173728 0.66 0.992915
Target:  5'- uUGUcCGUGGCc-CGUGcCCGCaGCUGCu -3'
miRNA:   3'- -ACAcGCGCUGuuGCAU-GGCGaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 13213 0.66 0.992915
Target:  5'- cGUGCgGCGuuACAGCGU-CUGgUGCgGCa -3'
miRNA:   3'- aCACG-CGC--UGUUGCAuGGCgAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 176588 0.66 0.992915
Target:  5'- gGUGCaGCGGCugacggugAACGUGgcUCGCUGCguguuUGCg -3'
miRNA:   3'- aCACG-CGCUG--------UUGCAU--GGCGAUG-----ACG- -5'
30074 3' -52.9 NC_006273.1 + 159625 0.66 0.992915
Target:  5'- -aUGCGCaGAuCGGaaaaGUGCUGCUGCaGCa -3'
miRNA:   3'- acACGCG-CU-GUUg---CAUGGCGAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 109237 0.66 0.992915
Target:  5'- cGUGCGaacCGACAugGgcguCCGCg--UGCa -3'
miRNA:   3'- aCACGC---GCUGUugCau--GGCGaugACG- -5'
30074 3' -52.9 NC_006273.1 + 44229 0.66 0.992915
Target:  5'- cGUGauCGCGu---CGUGCgCGCUGCUGg -3'
miRNA:   3'- aCAC--GCGCuguuGCAUG-GCGAUGACg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.