miRNA display CGI


Results 1 - 20 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 3' -52.9 NC_006273.1 + 47430 0.65 0.994413
Target:  5'- ---cCGCGACu-CGUACgacgucgucgaacgCGCUGCUGCc -3'
miRNA:   3'- acacGCGCUGuuGCAUG--------------GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 132334 0.66 0.989504
Target:  5'- aGUGCGguuugcaucaCGAUGAUGgaaGCCGCggccGCUGCc -3'
miRNA:   3'- aCACGC----------GCUGUUGCa--UGGCGa---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 161844 0.66 0.99076
Target:  5'- cGUGCGCcaguucgucuuuGACAACGc-CCGuCUggucaACUGCg -3'
miRNA:   3'- aCACGCG------------CUGUUGCauGGC-GA-----UGACG- -5'
30074 3' -52.9 NC_006273.1 + 164572 0.66 0.993831
Target:  5'- cGUGC-CGAaGGCcagGCCGCUggcGCUGCc -3'
miRNA:   3'- aCACGcGCUgUUGca-UGGCGA---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 43908 0.66 0.993831
Target:  5'- --cGCGCG-CAGuCGUACCGCUccACcuauauaauuuUGCu -3'
miRNA:   3'- acaCGCGCuGUU-GCAUGGCGA--UG-----------ACG- -5'
30074 3' -52.9 NC_006273.1 + 73574 0.66 0.991894
Target:  5'- --cGCGCGGacccucCGAUGUccuggcccGCCGCUGCcGCu -3'
miRNA:   3'- acaCGCGCU------GUUGCA--------UGGCGAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 20948 0.66 0.989504
Target:  5'- gGUGgcCGUGACGACGU--CGCUggaaaugcaucaGCUGCg -3'
miRNA:   3'- aCAC--GCGCUGUUGCAugGCGA------------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 74723 0.66 0.993831
Target:  5'- --cGCGCGGCAGCau-CgGCUcgaACUGUa -3'
miRNA:   3'- acaCGCGCUGUUGcauGgCGA---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 40849 0.66 0.993831
Target:  5'- --aGCGUGGCGG-GUACCGUcgACgGCg -3'
miRNA:   3'- acaCGCGCUGUUgCAUGGCGa-UGaCG- -5'
30074 3' -52.9 NC_006273.1 + 118503 0.66 0.988966
Target:  5'- --cGCGCccguacacGGcCAACGUACCGCgacgccgacccacGCUGCa -3'
miRNA:   3'- acaCGCG--------CU-GUUGCAUGGCGa------------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 1103 0.66 0.989504
Target:  5'- cGUcGCGgGAUGGCGgGCUGUUGCgUGCc -3'
miRNA:   3'- aCA-CGCgCUGUUGCaUGGCGAUG-ACG- -5'
30074 3' -52.9 NC_006273.1 + 101279 0.66 0.989504
Target:  5'- aGUGCGCGGCGcACaugaucaucucgGUGCUGagcCUGCa -3'
miRNA:   3'- aCACGCGCUGU-UG------------CAUGGCgauGACG- -5'
30074 3' -52.9 NC_006273.1 + 196113 0.66 0.994169
Target:  5'- --cGCGCGGCGuuucuggccaacagcACGgGCCGCgccaUGCg -3'
miRNA:   3'- acaCGCGCUGU---------------UGCaUGGCGaug-ACG- -5'
30074 3' -52.9 NC_006273.1 + 57574 0.66 0.991894
Target:  5'- --cGCaGUGACuGCGUACCGU--UUGCa -3'
miRNA:   3'- acaCG-CGCUGuUGCAUGGCGauGACG- -5'
30074 3' -52.9 NC_006273.1 + 167254 0.66 0.991894
Target:  5'- -aUGgGCGGCGugGUgACCGUgGCggugGCg -3'
miRNA:   3'- acACgCGCUGUugCA-UGGCGaUGa---CG- -5'
30074 3' -52.9 NC_006273.1 + 41041 0.66 0.989504
Target:  5'- cGUcGCGgGAUGGCGgGCUGUUGCgUGCc -3'
miRNA:   3'- aCA-CGCgCUGUUGCaUGGCGAUG-ACG- -5'
30074 3' -52.9 NC_006273.1 + 40486 0.66 0.991894
Target:  5'- --gGCGUGGucgaGGCGgcCCGgCUGCUGCc -3'
miRNA:   3'- acaCGCGCUg---UUGCauGGC-GAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 72578 0.66 0.99076
Target:  5'- --cGCaGCuGCGGCG-ACCGCgGCUGCc -3'
miRNA:   3'- acaCG-CGcUGUUGCaUGGCGaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 130298 0.66 0.991786
Target:  5'- cGUGCGCGuuggacgcuacacGCGACuuuuuucUGCUGgaGCUGCa -3'
miRNA:   3'- aCACGCGC-------------UGUUGc------AUGGCgaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 100762 0.66 0.993831
Target:  5'- cGUcGUGUGACAGCaGgaugcgACCGCgcgGCUGa -3'
miRNA:   3'- aCA-CGCGCUGUUG-Ca-----UGGCGa--UGACg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.