miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 3' -52.9 NC_006273.1 + 66636 1.13 0.005146
Target:  5'- cUGUGCGCGACAACGUACCGCUACUGCa -3'
miRNA:   3'- -ACACGCGCUGUUGCAUGGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 84296 0.82 0.394594
Target:  5'- gUGUGCGCGACGAUGUugCGUUugUa- -3'
miRNA:   3'- -ACACGCGCUGUUGCAugGCGAugAcg -5'
30074 3' -52.9 NC_006273.1 + 84293 0.81 0.40303
Target:  5'- gGUGCGCGGCGACaaGCUGUgGCUGCa -3'
miRNA:   3'- aCACGCGCUGUUGcaUGGCGaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 39839 0.81 0.437885
Target:  5'- gUGUgGCGCGGCGGCGaGCCGCUcaaagucacGCUGUg -3'
miRNA:   3'- -ACA-CGCGCUGUUGCaUGGCGA---------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 103238 0.81 0.437885
Target:  5'- --cGCGCGuguGCGGCGUACCGCUGauacuCUGCa -3'
miRNA:   3'- acaCGCGC---UGUUGCAUGGCGAU-----GACG- -5'
30074 3' -52.9 NC_006273.1 + 171549 0.8 0.445963
Target:  5'- gGUGCGUGggagaggucacucGCGGCGUGCCGCUGCcgGUg -3'
miRNA:   3'- aCACGCGC-------------UGUUGCAUGGCGAUGa-CG- -5'
30074 3' -52.9 NC_006273.1 + 121614 0.8 0.483773
Target:  5'- cGUGCGCGcACAccACGUGCCGC-AgUGCc -3'
miRNA:   3'- aCACGCGC-UGU--UGCAUGGCGaUgACG- -5'
30074 3' -52.9 NC_006273.1 + 84596 0.79 0.502768
Target:  5'- cGUGCGCGAaAGCuucgGCCgGCUGCUGCa -3'
miRNA:   3'- aCACGCGCUgUUGca--UGG-CGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 70941 0.79 0.502768
Target:  5'- cUGgGCGCGACGcgGCGUGCUGCUGCUc- -3'
miRNA:   3'- -ACaCGCGCUGU--UGCAUGGCGAUGAcg -5'
30074 3' -52.9 NC_006273.1 + 26433 0.79 0.531847
Target:  5'- aGUGcCGCGACGAUcccucGCCGCUAUUGCu -3'
miRNA:   3'- aCAC-GCGCUGUUGca---UGGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 89274 0.78 0.55852
Target:  5'- -uUGCGCGACGACGUgguggagaacgcGCCGUgaauggauugaaaaUGCUGCg -3'
miRNA:   3'- acACGCGCUGUUGCA------------UGGCG--------------AUGACG- -5'
30074 3' -52.9 NC_006273.1 + 99514 0.78 0.561509
Target:  5'- gGUG-GCGGCGGCG-GCUGCUGCUGUu -3'
miRNA:   3'- aCACgCGCUGUUGCaUGGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 82414 0.78 0.581535
Target:  5'- gUGcUGCGCGACccguGCGUGCUGCgcaagcaGCUGCu -3'
miRNA:   3'- -AC-ACGCGCUGu---UGCAUGGCGa------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 196165 0.78 0.591604
Target:  5'- --aGCGCGAC-GCGgGCaCGCUGCUGCc -3'
miRNA:   3'- acaCGCGCUGuUGCaUG-GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 1272 0.78 0.591604
Target:  5'- --aGCGCGAC-GCGgGCaCGCUGCUGCc -3'
miRNA:   3'- acaCGCGCUGuUGCaUG-GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 140461 0.77 0.601702
Target:  5'- cGUGUGCGACGugGagGCCcuguugugGCUGCUGUa -3'
miRNA:   3'- aCACGCGCUGUugCa-UGG--------CGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 165922 0.77 0.61081
Target:  5'- cGUGUgGUGACGACGUucuugaguccuccGCCGCUACaGCg -3'
miRNA:   3'- aCACG-CGCUGUUGCA-------------UGGCGAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 191044 0.76 0.6625
Target:  5'- --gGCGUGACAGCGUGCCaaUGgUGCg -3'
miRNA:   3'- acaCGCGCUGUUGCAUGGcgAUgACG- -5'
30074 3' -52.9 NC_006273.1 + 118731 0.76 0.672596
Target:  5'- cGUgGCGCGggcacggaccGCAACGUGCUGCUAuguCUGCc -3'
miRNA:   3'- aCA-CGCGC----------UGUUGCAUGGCGAU---GACG- -5'
30074 3' -52.9 NC_006273.1 + 113289 0.76 0.679644
Target:  5'- gGUGCGCGACGACGUGCuuucucucuggaguCGacguCUGCu -3'
miRNA:   3'- aCACGCGCUGUUGCAUG--------------GCgau-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.