miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 3' -52.9 NC_006273.1 + 144653 0.66 0.992818
Target:  5'- cGUGUGCugaucgaGGCGGCGUugCggcaGUUugUGCa -3'
miRNA:   3'- aCACGCG-------CUGUUGCAugG----CGAugACG- -5'
30074 3' -52.9 NC_006273.1 + 180191 0.66 0.991894
Target:  5'- --aGCGUGGCAcccGCuUACCGCgccaccgGCUGUc -3'
miRNA:   3'- acaCGCGCUGU---UGcAUGGCGa------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 160523 0.66 0.991894
Target:  5'- gGUGC-CGAC-GCG-ACCGCUGgUGa -3'
miRNA:   3'- aCACGcGCUGuUGCaUGGCGAUgACg -5'
30074 3' -52.9 NC_006273.1 + 99991 0.66 0.991894
Target:  5'- gGUGCGUGcgaaaGCAgcGCGUGCaCGCgUAgaGCg -3'
miRNA:   3'- aCACGCGC-----UGU--UGCAUG-GCG-AUgaCG- -5'
30074 3' -52.9 NC_006273.1 + 73574 0.66 0.991894
Target:  5'- --cGCGCGGacccucCGAUGUccuggcccGCCGCUGCcGCu -3'
miRNA:   3'- acaCGCGCU------GUUGCA--------UGGCGAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 167254 0.66 0.991894
Target:  5'- -aUGgGCGGCGugGUgACCGUgGCggugGCg -3'
miRNA:   3'- acACgCGCUGUugCA-UGGCGaUGa---CG- -5'
30074 3' -52.9 NC_006273.1 + 57574 0.66 0.991894
Target:  5'- --cGCaGUGACuGCGUACCGU--UUGCa -3'
miRNA:   3'- acaCG-CGCUGuUGCAUGGCGauGACG- -5'
30074 3' -52.9 NC_006273.1 + 40486 0.66 0.991894
Target:  5'- --gGCGUGGucgaGGCGgcCCGgCUGCUGCc -3'
miRNA:   3'- acaCGCGCUg---UUGCauGGC-GAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 130298 0.66 0.991786
Target:  5'- cGUGCGCGuuggacgcuacacGCGACuuuuuucUGCUGgaGCUGCa -3'
miRNA:   3'- aCACGCGC-------------UGUUGc------AUGGCgaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 204585 0.66 0.99076
Target:  5'- gGUG-GuCGACugcuGCuaccGCCGCUGCUGCu -3'
miRNA:   3'- aCACgC-GCUGu---UGca--UGGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 72578 0.66 0.99076
Target:  5'- --cGCaGCuGCGGCG-ACCGCgGCUGCc -3'
miRNA:   3'- acaCG-CGcUGUUGCaUGGCGaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 161844 0.66 0.99076
Target:  5'- cGUGCGCcaguucgucuuuGACAACGc-CCGuCUggucaACUGCg -3'
miRNA:   3'- aCACGCG------------CUGUUGCauGGC-GA-----UGACG- -5'
30074 3' -52.9 NC_006273.1 + 179424 0.66 0.99076
Target:  5'- cGU-CGCGuCAGCGgcaCGgUGCUGCg -3'
miRNA:   3'- aCAcGCGCuGUUGCaugGCgAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 42577 0.66 0.99076
Target:  5'- cGUGC-CGAUcACGcGCCGCaAgUGCg -3'
miRNA:   3'- aCACGcGCUGuUGCaUGGCGaUgACG- -5'
30074 3' -52.9 NC_006273.1 + 66959 0.66 0.990396
Target:  5'- -aUGCGgGuCcGCGUGCUGCUucaggaacacgaacACUGCu -3'
miRNA:   3'- acACGCgCuGuUGCAUGGCGA--------------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 92508 0.66 0.989504
Target:  5'- cUGUGUGgaaaCGuCGAUGUACCGUgacgUugUGCa -3'
miRNA:   3'- -ACACGC----GCuGUUGCAUGGCG----AugACG- -5'
30074 3' -52.9 NC_006273.1 + 91858 0.66 0.989504
Target:  5'- cGUGUGCGACAccaGCGcGgCGCcaUGCUcGCc -3'
miRNA:   3'- aCACGCGCUGU---UGCaUgGCG--AUGA-CG- -5'
30074 3' -52.9 NC_006273.1 + 201992 0.66 0.989504
Target:  5'- gGUGCGCGucCAGCGccUACUcugGCacucGCUGCg -3'
miRNA:   3'- aCACGCGCu-GUUGC--AUGG---CGa---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 118178 0.66 0.989504
Target:  5'- --gGCGUGGCGGCcugACUGCgGCUGUc -3'
miRNA:   3'- acaCGCGCUGUUGca-UGGCGaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 1103 0.66 0.989504
Target:  5'- cGUcGCGgGAUGGCGgGCUGUUGCgUGCc -3'
miRNA:   3'- aCA-CGCgCUGUUGCaUGGCGAUG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.