miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 3' -52.9 NC_006273.1 + 75 0.68 0.971426
Target:  5'- gUGUGUggacgGCGACGGCGacuagUugCGUgUGCUGCg -3'
miRNA:   3'- -ACACG-----CGCUGUUGC-----AugGCG-AUGACG- -5'
30074 3' -52.9 NC_006273.1 + 752 0.68 0.965421
Target:  5'- --aGCGCGuuuGCGGCGUGCUGUguccggcgcuUugUGCg -3'
miRNA:   3'- acaCGCGC---UGUUGCAUGGCG----------AugACG- -5'
30074 3' -52.9 NC_006273.1 + 1103 0.66 0.989504
Target:  5'- cGUcGCGgGAUGGCGgGCUGUUGCgUGCc -3'
miRNA:   3'- aCA-CGCgCUGUUGCaUGGCGAUG-ACG- -5'
30074 3' -52.9 NC_006273.1 + 1206 0.68 0.976643
Target:  5'- -uUGCGgGAUGGCGaGCUGUUGCgugGCg -3'
miRNA:   3'- acACGCgCUGUUGCaUGGCGAUGa--CG- -5'
30074 3' -52.9 NC_006273.1 + 1220 0.66 0.994169
Target:  5'- --cGCGCGGCGuuucuggccaacagcACGgGCCGCgccaUGCg -3'
miRNA:   3'- acaCGCGCUGU---------------UGCaUGGCGaug-ACG- -5'
30074 3' -52.9 NC_006273.1 + 1272 0.78 0.591604
Target:  5'- --aGCGCGAC-GCGgGCaCGCUGCUGCc -3'
miRNA:   3'- acaCGCGCUGuUGCaUG-GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 1615 0.7 0.927564
Target:  5'- gGUgGUGCGGC--UGUACCGCUGCaaccgGCu -3'
miRNA:   3'- aCA-CGCGCUGuuGCAUGGCGAUGa----CG- -5'
30074 3' -52.9 NC_006273.1 + 1885 0.67 0.983107
Target:  5'- cGUGCGuCGGCAccugaaccaGCGU-CUG-UGCUGCg -3'
miRNA:   3'- aCACGC-GCUGU---------UGCAuGGCgAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 2045 0.72 0.848246
Target:  5'- cGUGCGCGAUGGCaggaGCCGUgggguCUGCu -3'
miRNA:   3'- aCACGCGCUGUUGca--UGGCGau---GACG- -5'
30074 3' -52.9 NC_006273.1 + 2424 0.67 0.988119
Target:  5'- --cGCGCGGCGGC-UGCUGCccgaGCUGg -3'
miRNA:   3'- acaCGCGCUGUUGcAUGGCGa---UGACg -5'
30074 3' -52.9 NC_006273.1 + 7617 0.71 0.898424
Target:  5'- cUGgagGC-CGGCGACGUuaACUGCUacaGCUGCg -3'
miRNA:   3'- -ACa--CGcGCUGUUGCA--UGGCGA---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 7694 0.7 0.942239
Target:  5'- -aUGgGCGGCGGCGgcagugGCCGCgGCaGCg -3'
miRNA:   3'- acACgCGCUGUUGCa-----UGGCGaUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 12367 0.72 0.871022
Target:  5'- -uUGCGCGAC-ACGgACUGUUgcACUGCg -3'
miRNA:   3'- acACGCGCUGuUGCaUGGCGA--UGACG- -5'
30074 3' -52.9 NC_006273.1 + 12546 0.68 0.97413
Target:  5'- --gGCGaGAUGACGcguCCGUUGCUGCu -3'
miRNA:   3'- acaCGCgCUGUUGCau-GGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 13213 0.66 0.992915
Target:  5'- cGUGCgGCGuuACAGCGU-CUGgUGCgGCa -3'
miRNA:   3'- aCACG-CGC--UGUUGCAuGGCgAUGaCG- -5'
30074 3' -52.9 NC_006273.1 + 15697 0.66 0.993744
Target:  5'- --cGCGCGAgGGCGcagagcgggugauUACCGCccUGgUGCa -3'
miRNA:   3'- acaCGCGCUgUUGC-------------AUGGCG--AUgACG- -5'
30074 3' -52.9 NC_006273.1 + 16125 0.73 0.823739
Target:  5'- gGUGCGgccCGGCAGCaccaUGCCGgaGCUGCg -3'
miRNA:   3'- aCACGC---GCUGUUGc---AUGGCgaUGACG- -5'
30074 3' -52.9 NC_006273.1 + 16418 0.7 0.942239
Target:  5'- --cGCaCGACGugGUAgcgaUGCUGCUGCg -3'
miRNA:   3'- acaCGcGCUGUugCAUg---GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 18659 0.72 0.863633
Target:  5'- uUGUGCccaGCGGCAugGUGCUGCUcgACaaguuugGCg -3'
miRNA:   3'- -ACACG---CGCUGUugCAUGGCGA--UGa------CG- -5'
30074 3' -52.9 NC_006273.1 + 20948 0.66 0.989504
Target:  5'- gGUGgcCGUGACGACGU--CGCUggaaaugcaucaGCUGCg -3'
miRNA:   3'- aCAC--GCGCUGUUGCAugGCGA------------UGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.