miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 3' -52.9 NC_006273.1 + 118392 0.72 0.885163
Target:  5'- aGUGuCGUGuuAGCc-GCCGCUGCUGCc -3'
miRNA:   3'- aCAC-GCGCugUUGcaUGGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 232925 0.74 0.760951
Target:  5'- --aGCGCGuccCAGCGcgGCCGCUcccACUGCu -3'
miRNA:   3'- acaCGCGCu--GUUGCa-UGGCGA---UGACG- -5'
30074 3' -52.9 NC_006273.1 + 38695 0.74 0.770327
Target:  5'- cGgacCGCGACAACuacgGCCGCUGCgUGCg -3'
miRNA:   3'- aCac-GCGCUGUUGca--UGGCGAUG-ACG- -5'
30074 3' -52.9 NC_006273.1 + 166926 0.74 0.779582
Target:  5'- cGUGUGCGGCAucgucuGCGUGaugaGCUGCUGg -3'
miRNA:   3'- aCACGCGCUGU------UGCAUgg--CGAUGACg -5'
30074 3' -52.9 NC_006273.1 + 173997 0.74 0.779582
Target:  5'- --cGCGCGGCAGCaacgaGUACUGCUcagacuacACUGCc -3'
miRNA:   3'- acaCGCGCUGUUG-----CAUGGCGA--------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 140722 0.73 0.806534
Target:  5'- gGUG-GCGGCGGCGggGCCggcGCUugUGCg -3'
miRNA:   3'- aCACgCGCUGUUGCa-UGG---CGAugACG- -5'
30074 3' -52.9 NC_006273.1 + 77710 0.73 0.84026
Target:  5'- cGUGCGCGACcACGUcguuAUCaGCgUGCUGUg -3'
miRNA:   3'- aCACGCGCUGuUGCA----UGG-CG-AUGACG- -5'
30074 3' -52.9 NC_006273.1 + 115610 0.72 0.848246
Target:  5'- gGUGcCGgGACAGCGUGCCgGCgaacguuCUGUa -3'
miRNA:   3'- aCAC-GCgCUGUUGCAUGG-CGau-----GACG- -5'
30074 3' -52.9 NC_006273.1 + 196938 0.72 0.848246
Target:  5'- cGUGCGCGAUGGCaggaGCCGUgggguCUGCu -3'
miRNA:   3'- aCACGCGCUGUUGca--UGGCGau---GACG- -5'
30074 3' -52.9 NC_006273.1 + 234494 0.75 0.712568
Target:  5'- --gGCGCGGCGACaUGCCGUUGCgcuggGCc -3'
miRNA:   3'- acaCGCGCUGUUGcAUGGCGAUGa----CG- -5'
30074 3' -52.9 NC_006273.1 + 113289 0.76 0.679644
Target:  5'- gGUGCGCGACGACGUGCuuucucucuggaguCGacguCUGCu -3'
miRNA:   3'- aCACGCGCUGUUGCAUG--------------GCgau-GACG- -5'
30074 3' -52.9 NC_006273.1 + 118731 0.76 0.672596
Target:  5'- cGUgGCGCGggcacggaccGCAACGUGCUGCUAuguCUGCc -3'
miRNA:   3'- aCA-CGCGC----------UGUUGCAUGGCGAU---GACG- -5'
30074 3' -52.9 NC_006273.1 + 84296 0.82 0.394594
Target:  5'- gUGUGCGCGACGAUGUugCGUUugUa- -3'
miRNA:   3'- -ACACGCGCUGUUGCAugGCGAugAcg -5'
30074 3' -52.9 NC_006273.1 + 39839 0.81 0.437885
Target:  5'- gUGUgGCGCGGCGGCGaGCCGCUcaaagucacGCUGUg -3'
miRNA:   3'- -ACA-CGCGCUGUUGCaUGGCGA---------UGACG- -5'
30074 3' -52.9 NC_006273.1 + 171549 0.8 0.445963
Target:  5'- gGUGCGUGggagaggucacucGCGGCGUGCCGCUGCcgGUg -3'
miRNA:   3'- aCACGCGC-------------UGUUGCAUGGCGAUGa-CG- -5'
30074 3' -52.9 NC_006273.1 + 121614 0.8 0.483773
Target:  5'- cGUGCGCGcACAccACGUGCCGC-AgUGCc -3'
miRNA:   3'- aCACGCGC-UGU--UGCAUGGCGaUgACG- -5'
30074 3' -52.9 NC_006273.1 + 89274 0.78 0.55852
Target:  5'- -uUGCGCGACGACGUgguggagaacgcGCCGUgaauggauugaaaaUGCUGCg -3'
miRNA:   3'- acACGCGCUGUUGCA------------UGGCG--------------AUGACG- -5'
30074 3' -52.9 NC_006273.1 + 99514 0.78 0.561509
Target:  5'- gGUG-GCGGCGGCG-GCUGCUGCUGUu -3'
miRNA:   3'- aCACgCGCUGUUGCaUGGCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 196165 0.78 0.591604
Target:  5'- --aGCGCGAC-GCGgGCaCGCUGCUGCc -3'
miRNA:   3'- acaCGCGCUGuUGCaUG-GCGAUGACG- -5'
30074 3' -52.9 NC_006273.1 + 140461 0.77 0.601702
Target:  5'- cGUGUGCGACGugGagGCCcuguugugGCUGCUGUa -3'
miRNA:   3'- aCACGCGCUGUugCa-UGG--------CGAUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.