miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 5' -56.9 NC_006273.1 + 27579 0.66 0.934382
Target:  5'- uUGCAGC-GUGACG-GUggaacaacccaGUACCAGCAc -3'
miRNA:   3'- gACGUCGaCGCUGUgCG-----------CAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 32734 0.66 0.934382
Target:  5'- -aGUAGCUGUGuaGCAggcCGCGcuCCAGCAa -3'
miRNA:   3'- gaCGUCGACGC--UGU---GCGCauGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 87745 0.66 0.934382
Target:  5'- -cGUGGCUGCGGCGgccguuguCGCGgcguuUGCUGGCGg -3'
miRNA:   3'- gaCGUCGACGCUGU--------GCGC-----AUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 209406 0.66 0.934382
Target:  5'- uUGaCGGCcGCcaaaaGCGCGCGUuCCAGCGg -3'
miRNA:   3'- gAC-GUCGaCGc----UGUGCGCAuGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 104982 0.66 0.934382
Target:  5'- -cGCGGUcGCGAUGCaGCuGaGCCAGCAc -3'
miRNA:   3'- gaCGUCGaCGCUGUG-CG-CaUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 119925 0.66 0.92941
Target:  5'- gUGCAGUccGCuaacgGGCACGCGguCCAGCGg -3'
miRNA:   3'- gACGUCGa-CG-----CUGUGCGCauGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 31387 0.66 0.92941
Target:  5'- gCUGCGGCaucGCGGCACGCccgaaucGCC-GCGg -3'
miRNA:   3'- -GACGUCGa--CGCUGUGCGca-----UGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 73187 0.66 0.92941
Target:  5'- gCUGCAGCgcaccGCGGC-CGaucACCAGCu -3'
miRNA:   3'- -GACGUCGa----CGCUGuGCgcaUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 116789 0.66 0.92941
Target:  5'- -gGC-GCUGCGACgACGUGgagGCC-GCGa -3'
miRNA:   3'- gaCGuCGACGCUG-UGCGCa--UGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 179723 0.66 0.92941
Target:  5'- aCUGUcccAGUcGCGACACGCagcCCAGCc -3'
miRNA:   3'- -GACG---UCGaCGCUGUGCGcauGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 106873 0.66 0.92941
Target:  5'- -gGCAGCcGCGACA---GUACCAGUu -3'
miRNA:   3'- gaCGUCGaCGCUGUgcgCAUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 98689 0.66 0.92941
Target:  5'- -cGCAGCUGCaccaacucauGAC-CGCGUAUCuuggaaGGCGg -3'
miRNA:   3'- gaCGUCGACG----------CUGuGCGCAUGG------UCGU- -5'
30074 5' -56.9 NC_006273.1 + 81601 0.66 0.92941
Target:  5'- -gGCGGCcGCGGC-CGCGgcggagGCCgaAGCGg -3'
miRNA:   3'- gaCGUCGaCGCUGuGCGCa-----UGG--UCGU- -5'
30074 5' -56.9 NC_006273.1 + 145190 0.66 0.927873
Target:  5'- -cGCAGCauuuggcguuggugUGUGGCACGUGUcCgCAGCu -3'
miRNA:   3'- gaCGUCG--------------ACGCUGUGCGCAuG-GUCGu -5'
30074 5' -56.9 NC_006273.1 + 189891 0.66 0.924209
Target:  5'- -cGCAGCUG-GGC-CGUGaaaACCAGCu -3'
miRNA:   3'- gaCGUCGACgCUGuGCGCa--UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 80063 0.66 0.924209
Target:  5'- -cGCGGCagGCG-CACuCGU-CCAGCAg -3'
miRNA:   3'- gaCGUCGa-CGCuGUGcGCAuGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 153419 0.66 0.924209
Target:  5'- -cGCGcGCUGCucgucaccGGCACgGCGggcGCCGGCAa -3'
miRNA:   3'- gaCGU-CGACG--------CUGUG-CGCa--UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 196626 0.66 0.924209
Target:  5'- -gGgAGCUGCGcCG-GCGguggGCCGGCAc -3'
miRNA:   3'- gaCgUCGACGCuGUgCGCa---UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 131065 0.66 0.924209
Target:  5'- -aGCAGCUGCGcCGgGCcUAUCAGgAa -3'
miRNA:   3'- gaCGUCGACGCuGUgCGcAUGGUCgU- -5'
30074 5' -56.9 NC_006273.1 + 93582 0.66 0.924209
Target:  5'- -aGCGGCgGCGGCcuGCGCG-GCCuGUAc -3'
miRNA:   3'- gaCGUCGaCGCUG--UGCGCaUGGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.