miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 5' -56.9 NC_006273.1 + 196626 0.66 0.924209
Target:  5'- -gGgAGCUGCGcCG-GCGguggGCCGGCAc -3'
miRNA:   3'- gaCgUCGACGCuGUgCGCa---UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 121569 0.66 0.911383
Target:  5'- cCUGCaucuuGGUUGCG-CGCGUGUucuccauggagcaaACCAGCu -3'
miRNA:   3'- -GACG-----UCGACGCuGUGCGCA--------------UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 95242 0.66 0.924209
Target:  5'- ---aGGCUGUGGCGUGUGUGCUGGCc -3'
miRNA:   3'- gacgUCGACGCUGUGCGCAUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 21791 0.66 0.90664
Target:  5'- aCUGCGGUUGggagggugaaCGGCAcCGCGUAguccacuacauccCCGGCAc -3'
miRNA:   3'- -GACGUCGAC----------GCUGU-GCGCAU-------------GGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 33343 0.66 0.915414
Target:  5'- aCUGCGGCagccgcgugcgauccUGCGGCGCGUccccGUGuCgCAGCGa -3'
miRNA:   3'- -GACGUCG---------------ACGCUGUGCG----CAU-G-GUCGU- -5'
30074 5' -56.9 NC_006273.1 + 218202 0.66 0.907241
Target:  5'- -gGCGGCgGcCGACG-GCGgacgACCGGCAu -3'
miRNA:   3'- gaCGUCGaC-GCUGUgCGCa---UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 46154 0.66 0.923676
Target:  5'- -gGCGaacGCUGCGACACGCuagcgACCgcccugcGGCAu -3'
miRNA:   3'- gaCGU---CGACGCUGUGCGca---UGG-------UCGU- -5'
30074 5' -56.9 NC_006273.1 + 131065 0.66 0.924209
Target:  5'- -aGCAGCUGCGcCGgGCcUAUCAGgAa -3'
miRNA:   3'- gaCGUCGACGCuGUgCGcAUGGUCgU- -5'
30074 5' -56.9 NC_006273.1 + 80063 0.66 0.924209
Target:  5'- -cGCGGCagGCG-CACuCGU-CCAGCAg -3'
miRNA:   3'- gaCGUCGa-CGCuGUGcGCAuGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 153350 0.66 0.912546
Target:  5'- gCUGCcGCUucguccgaggccgGCGGCacGCGCGUGCCcuGCGu -3'
miRNA:   3'- -GACGuCGA-------------CGCUG--UGCGCAUGGu-CGU- -5'
30074 5' -56.9 NC_006273.1 + 33817 0.66 0.907241
Target:  5'- -cGUAGCcGCGACGCGgGUuggcacaggcCCAGCc -3'
miRNA:   3'- gaCGUCGaCGCUGUGCgCAu---------GGUCGu -5'
30074 5' -56.9 NC_006273.1 + 184426 0.66 0.924209
Target:  5'- aUGuCGGCcgGCGguGCugGCGUcACCGGUAa -3'
miRNA:   3'- gAC-GUCGa-CGC--UGugCGCA-UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 196894 0.66 0.913124
Target:  5'- -aGCGGCgaGCGGCACGgagaCGgaggccGCCGGCGg -3'
miRNA:   3'- gaCGUCGa-CGCUGUGC----GCa-----UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 149118 0.66 0.91878
Target:  5'- uCUGCGuuuucGCUcGCGACGCGCcuuCUGGCAg -3'
miRNA:   3'- -GACGU-----CGA-CGCUGUGCGcauGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 140413 0.66 0.907241
Target:  5'- -aGCcguGCUGCGACAgGUGUacacGCCGGg- -3'
miRNA:   3'- gaCGu--CGACGCUGUgCGCA----UGGUCgu -5'
30074 5' -56.9 NC_006273.1 + 104982 0.66 0.934382
Target:  5'- -cGCGGUcGCGAUGCaGCuGaGCCAGCAc -3'
miRNA:   3'- gaCGUCGaCGCUGUG-CG-CaUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 73187 0.66 0.92941
Target:  5'- gCUGCAGCgcaccGCGGC-CGaucACCAGCu -3'
miRNA:   3'- -GACGUCGa----CGCUGuGCgcaUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 153419 0.66 0.924209
Target:  5'- -cGCGcGCUGCucgucaccGGCACgGCGggcGCCGGCAa -3'
miRNA:   3'- gaCGU-CGACG--------CUGUG-CGCa--UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 31387 0.66 0.92941
Target:  5'- gCUGCGGCaucGCGGCACGCccgaaucGCC-GCGg -3'
miRNA:   3'- -GACGUCGa--CGCUGUGCGca-----UGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 197383 0.66 0.913124
Target:  5'- cCUGCAcccgcgcgccgcGCUGUgGGCGCGCGaGCC-GCAc -3'
miRNA:   3'- -GACGU------------CGACG-CUGUGCGCaUGGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.