miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 5' -56.9 NC_006273.1 + 66670 1.09 0.003485
Target:  5'- cCUGCAGCUGCGACACGCGUACCAGCAa -3'
miRNA:   3'- -GACGUCGACGCUGUGCGCAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 23747 0.82 0.195411
Target:  5'- uCUGCAGCUGCGuCACGgGUcuaGCCGGCc -3'
miRNA:   3'- -GACGUCGACGCuGUGCgCA---UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 47143 0.78 0.312342
Target:  5'- uUGCAGCUGCGACACGCGcuggAGCu -3'
miRNA:   3'- gACGUCGACGCUGUGCGCauggUCGu -5'
30074 5' -56.9 NC_006273.1 + 158217 0.78 0.333877
Target:  5'- gUGCAGCgugagGCGcggGCGCGCGUcgGCCGGCGa -3'
miRNA:   3'- gACGUCGa----CGC---UGUGCGCA--UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 66441 0.77 0.372133
Target:  5'- -cGCAGCUGCuGACGCGCGUGCaCAa-- -3'
miRNA:   3'- gaCGUCGACG-CUGUGCGCAUG-GUcgu -5'
30074 5' -56.9 NC_006273.1 + 68347 0.77 0.372133
Target:  5'- -cGCAGUUGCGACaACGCG-ACgAGCAg -3'
miRNA:   3'- gaCGUCGACGCUG-UGCGCaUGgUCGU- -5'
30074 5' -56.9 NC_006273.1 + 61269 0.77 0.372133
Target:  5'- aCUGCAGC-GCGGCGCGCGcgGCCgaGGCc -3'
miRNA:   3'- -GACGUCGaCGCUGUGCGCa-UGG--UCGu -5'
30074 5' -56.9 NC_006273.1 + 37216 0.75 0.448122
Target:  5'- -cGCGGC--CGACGCGCGUGCCcaGGCAg -3'
miRNA:   3'- gaCGUCGacGCUGUGCGCAUGG--UCGU- -5'
30074 5' -56.9 NC_006273.1 + 163005 0.74 0.503281
Target:  5'- -gGCAGCUGCggcgguagGACACGCGggcGCCGGaCAg -3'
miRNA:   3'- gaCGUCGACG--------CUGUGCGCa--UGGUC-GU- -5'
30074 5' -56.9 NC_006273.1 + 147753 0.74 0.503281
Target:  5'- -aGCAGCaccagGCGACAC-CGUAUCAGCu -3'
miRNA:   3'- gaCGUCGa----CGCUGUGcGCAUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 115605 0.74 0.541641
Target:  5'- gUGCGGgUGCcggGACA-GCGUGCCGGCGa -3'
miRNA:   3'- gACGUCgACG---CUGUgCGCAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 116608 0.74 0.541641
Target:  5'- -cGCAGCgacauggacgGCGACGUGCGUACCgcGGCAg -3'
miRNA:   3'- gaCGUCGa---------CGCUGUGCGCAUGG--UCGU- -5'
30074 5' -56.9 NC_006273.1 + 37763 0.73 0.571037
Target:  5'- gCUGCAGCUGuCG--GCGCGUAUCAGgAg -3'
miRNA:   3'- -GACGUCGAC-GCugUGCGCAUGGUCgU- -5'
30074 5' -56.9 NC_006273.1 + 112333 0.73 0.571037
Target:  5'- cCUGCGGCUGCGACGCGaaa--CGGUg -3'
miRNA:   3'- -GACGUCGACGCUGUGCgcaugGUCGu -5'
30074 5' -56.9 NC_006273.1 + 177835 0.73 0.600802
Target:  5'- -gGCAGCgcGCGagaGCACGCGUcCCAGUAa -3'
miRNA:   3'- gaCGUCGa-CGC---UGUGCGCAuGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 43024 0.72 0.610776
Target:  5'- gUGUAGCcGCGACGCGCcacgGCCGcGCAa -3'
miRNA:   3'- gACGUCGaCGCUGUGCGca--UGGU-CGU- -5'
30074 5' -56.9 NC_006273.1 + 45455 0.72 0.617768
Target:  5'- gCUGCagacGGCUGUGuCGCGCGUgugcgcgcucuucaACCAGCu -3'
miRNA:   3'- -GACG----UCGACGCuGUGCGCA--------------UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 168627 0.72 0.620766
Target:  5'- -cGCGGCUGCccGGguCGCGcACCAGCGu -3'
miRNA:   3'- gaCGUCGACG--CUguGCGCaUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 105116 0.72 0.629764
Target:  5'- -cGCGGCUGCGACgguugcaccaccgACGCc-ACCGGCGg -3'
miRNA:   3'- gaCGUCGACGCUG-------------UGCGcaUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 192658 0.72 0.629764
Target:  5'- aUGCGGCUcgucgccGUGugGCGCGgccugGCCGGCu -3'
miRNA:   3'- gACGUCGA-------CGCugUGCGCa----UGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.