miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 5' -56.9 NC_006273.1 + 184426 0.66 0.924209
Target:  5'- aUGuCGGCcgGCGguGCugGCGUcACCGGUAa -3'
miRNA:   3'- gAC-GUCGa-CGC--UGugCGCA-UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 189891 0.66 0.924209
Target:  5'- -cGCAGCUG-GGC-CGUGaaaACCAGCu -3'
miRNA:   3'- gaCGUCGACgCUGuGCGCa--UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 1734 0.66 0.924209
Target:  5'- -gGgAGCUGCGcCG-GCGguggGCCGGCAc -3'
miRNA:   3'- gaCgUCGACGCuGUgCGCa---UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 46154 0.66 0.923676
Target:  5'- -gGCGaacGCUGCGACACGCuagcgACCgcccugcGGCAu -3'
miRNA:   3'- gaCGU---CGACGCUGUGCGca---UGG-------UCGU- -5'
30074 5' -56.9 NC_006273.1 + 75451 0.66 0.91878
Target:  5'- --cUAGCUGCGGCGgaGcCGUcGCCGGCAg -3'
miRNA:   3'- gacGUCGACGCUGUg-C-GCA-UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 161793 0.66 0.91878
Target:  5'- -gGCGGCaGCGGCA-GCGgcggGCCAGg- -3'
miRNA:   3'- gaCGUCGaCGCUGUgCGCa---UGGUCgu -5'
30074 5' -56.9 NC_006273.1 + 149118 0.66 0.91878
Target:  5'- uCUGCGuuuucGCUcGCGACGCGCcuuCUGGCAg -3'
miRNA:   3'- -GACGU-----CGA-CGCUGUGCGcauGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 52899 0.66 0.91878
Target:  5'- uUGCAGCUugggGUGACuaaaGUGUGUCAGCAu -3'
miRNA:   3'- gACGUCGA----CGCUGug--CGCAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 33343 0.66 0.915414
Target:  5'- aCUGCGGCagccgcgugcgauccUGCGGCGCGUccccGUGuCgCAGCGa -3'
miRNA:   3'- -GACGUCG---------------ACGCUGUGCG----CAU-G-GUCGU- -5'
30074 5' -56.9 NC_006273.1 + 121362 0.66 0.915414
Target:  5'- aUGCAGCgaGCGACACGUGgUggaaauuacaacaccGCCAcGCu -3'
miRNA:   3'- gACGUCGa-CGCUGUGCGC-A---------------UGGU-CGu -5'
30074 5' -56.9 NC_006273.1 + 100003 0.66 0.913124
Target:  5'- -aGCAGC-GCGuGCACGCGUagaGCgAGUg -3'
miRNA:   3'- gaCGUCGaCGC-UGUGCGCA---UGgUCGu -5'
30074 5' -56.9 NC_006273.1 + 2001 0.66 0.913124
Target:  5'- -aGCGGCgaGCGGCACGgagaCGgaggccGCCGGCGg -3'
miRNA:   3'- gaCGUCGa-CGCUGUGC----GCa-----UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 165719 0.66 0.913124
Target:  5'- cCUGCuGCgUGuCGAUGCGCugGUGCCAGgCGg -3'
miRNA:   3'- -GACGuCG-AC-GCUGUGCG--CAUGGUC-GU- -5'
30074 5' -56.9 NC_006273.1 + 145887 0.66 0.913124
Target:  5'- -aGCAGCcGCGACGaggugGCGggcGCCAcGCAg -3'
miRNA:   3'- gaCGUCGaCGCUGUg----CGCa--UGGU-CGU- -5'
30074 5' -56.9 NC_006273.1 + 2490 0.66 0.913124
Target:  5'- cCUGCAcccgcgcgccgcGCUGUgGGCGCGCGaGCC-GCAc -3'
miRNA:   3'- -GACGU------------CGACG-CUGUGCGCaUGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 196894 0.66 0.913124
Target:  5'- -aGCGGCgaGCGGCACGgagaCGgaggccGCCGGCGg -3'
miRNA:   3'- gaCGUCGa-CGCUGUGC----GCa-----UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 197383 0.66 0.913124
Target:  5'- cCUGCAcccgcgcgccgcGCUGUgGGCGCGCGaGCC-GCAc -3'
miRNA:   3'- -GACGU------------CGACG-CUGUGCGCaUGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 153350 0.66 0.912546
Target:  5'- gCUGCcGCUucguccgaggccgGCGGCacGCGCGUGCCcuGCGu -3'
miRNA:   3'- -GACGuCGA-------------CGCUG--UGCGCAUGGu-CGU- -5'
30074 5' -56.9 NC_006273.1 + 121569 0.66 0.911383
Target:  5'- cCUGCaucuuGGUUGCG-CGCGUGUucuccauggagcaaACCAGCu -3'
miRNA:   3'- -GACG-----UCGACGCuGUGCGCA--------------UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 199021 0.66 0.911383
Target:  5'- gUGCGGCUgucgcGCGACcucaggggcuucguGCGCGUgggGCUGGCGc -3'
miRNA:   3'- gACGUCGA-----CGCUG--------------UGCGCA---UGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.