miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 5' -56.9 NC_006273.1 + 1734 0.66 0.924209
Target:  5'- -gGgAGCUGCGcCG-GCGguggGCCGGCAc -3'
miRNA:   3'- gaCgUCGACGCuGUgCGCa---UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 1802 0.67 0.881492
Target:  5'- aUGguGCUGCuGgGCGCGUGgCAGgAg -3'
miRNA:   3'- gACguCGACGcUgUGCGCAUgGUCgU- -5'
30074 5' -56.9 NC_006273.1 + 1953 0.7 0.767232
Target:  5'- -gGUGGCUGgGuuGCGCGgcgggGCCGGCGa -3'
miRNA:   3'- gaCGUCGACgCugUGCGCa----UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 2001 0.66 0.913124
Target:  5'- -aGCGGCgaGCGGCACGgagaCGgaggccGCCGGCGg -3'
miRNA:   3'- gaCGUCGa-CGCUGUGC----GCa-----UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 2229 0.68 0.852369
Target:  5'- -cGCGGUgaacGUGGCGCGUGgaUGCCGGCc -3'
miRNA:   3'- gaCGUCGa---CGCUGUGCGC--AUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 2309 0.67 0.881492
Target:  5'- aCUGCccGCUGgacgGGCACGUGUACCcGCu -3'
miRNA:   3'- -GACGu-CGACg---CUGUGCGCAUGGuCGu -5'
30074 5' -56.9 NC_006273.1 + 2490 0.66 0.913124
Target:  5'- cCUGCAcccgcgcgccgcGCUGUgGGCGCGCGaGCC-GCAc -3'
miRNA:   3'- -GACGU------------CGACG-CUGUGCGCaUGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 16314 0.69 0.776397
Target:  5'- uCUGCuGCUGUG-CGCGCGUcaucuggacgaACUGGCGc -3'
miRNA:   3'- -GACGuCGACGCuGUGCGCA-----------UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 16886 0.69 0.820207
Target:  5'- --aCGGuCUGCGGCGCGCG-GCCAGg- -3'
miRNA:   3'- gacGUC-GACGCUGUGCGCaUGGUCgu -5'
30074 5' -56.9 NC_006273.1 + 17393 0.66 0.907241
Target:  5'- -cGCGGUUGC--CGCGCGUauggccGCCGGCc -3'
miRNA:   3'- gaCGUCGACGcuGUGCGCA------UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 21791 0.66 0.90664
Target:  5'- aCUGCGGUUGggagggugaaCGGCAcCGCGUAguccacuacauccCCGGCAc -3'
miRNA:   3'- -GACGUCGAC----------GCUGU-GCGCAU-------------GGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 23368 0.67 0.901134
Target:  5'- -aGCGGCUGCGcauucgccugccGCAU-CGaUACCAGCGg -3'
miRNA:   3'- gaCGUCGACGC------------UGUGcGC-AUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 23747 0.82 0.195411
Target:  5'- uCUGCAGCUGCGuCACGgGUcuaGCCGGCc -3'
miRNA:   3'- -GACGUCGACGCuGUGCgCA---UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 27579 0.66 0.934382
Target:  5'- uUGCAGC-GUGACG-GUggaacaacccaGUACCAGCAc -3'
miRNA:   3'- gACGUCGaCGCUGUgCG-----------CAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 28303 0.69 0.803118
Target:  5'- gUGCu-CUGCGuugcCACGCGUACUGGCu -3'
miRNA:   3'- gACGucGACGCu---GUGCGCAUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 30678 0.71 0.71986
Target:  5'- cCUGCGGC--CGGC-CGCgGUGCCGGCGg -3'
miRNA:   3'- -GACGUCGacGCUGuGCG-CAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 31387 0.66 0.92941
Target:  5'- gCUGCGGCaucGCGGCACGCccgaaucGCC-GCGg -3'
miRNA:   3'- -GACGUCGa--CGCUGUGCGca-----UGGuCGU- -5'
30074 5' -56.9 NC_006273.1 + 32037 0.67 0.894805
Target:  5'- gCUGCuGUUGgGAUACGUGcugGCCAGg- -3'
miRNA:   3'- -GACGuCGACgCUGUGCGCa--UGGUCgu -5'
30074 5' -56.9 NC_006273.1 + 32734 0.66 0.934382
Target:  5'- -aGUAGCUGUGuaGCAggcCGCGcuCCAGCAa -3'
miRNA:   3'- gaCGUCGACGC--UGU---GCGCauGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 33343 0.66 0.915414
Target:  5'- aCUGCGGCagccgcgugcgauccUGCGGCGCGUccccGUGuCgCAGCGa -3'
miRNA:   3'- -GACGUCG---------------ACGCUGUGCG----CAU-G-GUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.