miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30074 5' -56.9 NC_006273.1 + 40943 0.7 0.748567
Target:  5'- gUGCGGCgucGCGACuCGCuUGcCCAGCAc -3'
miRNA:   3'- gACGUCGa--CGCUGuGCGcAU-GGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 192658 0.72 0.629764
Target:  5'- aUGCGGCUcgucgccGUGugGCGCGgccugGCCGGCu -3'
miRNA:   3'- gACGUCGA-------CGCugUGCGCa----UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 124433 0.72 0.630764
Target:  5'- gCUGCGGCcGCG-CGgGCGUGCgCGGCu -3'
miRNA:   3'- -GACGUCGaCGCuGUgCGCAUG-GUCGu -5'
30074 5' -56.9 NC_006273.1 + 76076 0.71 0.700348
Target:  5'- gUGCAGCUGCuuuucuAUAUGUGgGCCGGCAc -3'
miRNA:   3'- gACGUCGACGc-----UGUGCGCaUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 77732 0.71 0.71986
Target:  5'- -aGCGuGCUGUGuCACGcCGUcucgGCCAGCAg -3'
miRNA:   3'- gaCGU-CGACGCuGUGC-GCA----UGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 120443 0.71 0.71986
Target:  5'- -aGCAGCgGUGACAgGUGUGgCGGCc -3'
miRNA:   3'- gaCGUCGaCGCUGUgCGCAUgGUCGu -5'
30074 5' -56.9 NC_006273.1 + 44429 0.7 0.738131
Target:  5'- uCUGCAGCgcaUGCGGCAguguuucCGCG-GCCAGUu -3'
miRNA:   3'- -GACGUCG---ACGCUGU-------GCGCaUGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 216493 0.7 0.739084
Target:  5'- gCUGCgAGCgUGUGAUggugcccaguGCGcCGUGCCAGCGc -3'
miRNA:   3'- -GACG-UCG-ACGCUG----------UGC-GCAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 72578 0.7 0.748567
Target:  5'- -cGCAGCUGCGGCGacCGCGgcUGCCguuGGUg -3'
miRNA:   3'- gaCGUCGACGCUGU--GCGC--AUGG---UCGu -5'
30074 5' -56.9 NC_006273.1 + 105116 0.72 0.629764
Target:  5'- -cGCGGCUGCGACgguugcaccaccgACGCc-ACCGGCGg -3'
miRNA:   3'- gaCGUCGACGCUG-------------UGCGcaUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 45455 0.72 0.617768
Target:  5'- gCUGCagacGGCUGUGuCGCGCGUgugcgcgcucuucaACCAGCu -3'
miRNA:   3'- -GACG----UCGACGCuGUGCGCA--------------UGGUCGu -5'
30074 5' -56.9 NC_006273.1 + 43024 0.72 0.610776
Target:  5'- gUGUAGCcGCGACGCGCcacgGCCGcGCAa -3'
miRNA:   3'- gACGUCGaCGCUGUGCGca--UGGU-CGU- -5'
30074 5' -56.9 NC_006273.1 + 47143 0.78 0.312342
Target:  5'- uUGCAGCUGCGACACGCGcuggAGCu -3'
miRNA:   3'- gACGUCGACGCUGUGCGCauggUCGu -5'
30074 5' -56.9 NC_006273.1 + 68347 0.77 0.372133
Target:  5'- -cGCAGUUGCGACaACGCG-ACgAGCAg -3'
miRNA:   3'- gaCGUCGACGCUG-UGCGCaUGgUCGU- -5'
30074 5' -56.9 NC_006273.1 + 61269 0.77 0.372133
Target:  5'- aCUGCAGC-GCGGCGCGCGcgGCCgaGGCc -3'
miRNA:   3'- -GACGUCGaCGCUGUGCGCa-UGG--UCGu -5'
30074 5' -56.9 NC_006273.1 + 66441 0.77 0.372133
Target:  5'- -cGCAGCUGCuGACGCGCGUGCaCAa-- -3'
miRNA:   3'- gaCGUCGACG-CUGUGCGCAUG-GUcgu -5'
30074 5' -56.9 NC_006273.1 + 37216 0.75 0.448122
Target:  5'- -cGCGGC--CGACGCGCGUGCCcaGGCAg -3'
miRNA:   3'- gaCGUCGacGCUGUGCGCAUGG--UCGU- -5'
30074 5' -56.9 NC_006273.1 + 115605 0.74 0.541641
Target:  5'- gUGCGGgUGCcggGACA-GCGUGCCGGCGa -3'
miRNA:   3'- gACGUCgACG---CUGUgCGCAUGGUCGU- -5'
30074 5' -56.9 NC_006273.1 + 37763 0.73 0.571037
Target:  5'- gCUGCAGCUGuCG--GCGCGUAUCAGgAg -3'
miRNA:   3'- -GACGUCGAC-GCugUGCGCAUGGUCgU- -5'
30074 5' -56.9 NC_006273.1 + 177835 0.73 0.600802
Target:  5'- -gGCAGCgcGCGagaGCACGCGUcCCAGUAa -3'
miRNA:   3'- gaCGUCGa-CGC---UGUGCGCAuGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.