miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30105 3' -53.3 NC_006273.1 + 188330 0.66 0.99405
Target:  5'- gGGCGUUUGaUGGaGGUgagGCAGCgcaaCGGu -3'
miRNA:   3'- gCCGCAAACgACCgCCAa--UGUUG----GCC- -5'
30105 3' -53.3 NC_006273.1 + 162198 0.66 0.99405
Target:  5'- uGGUGaucgGCc-GCGGUgcgcUGCAGCCGGa -3'
miRNA:   3'- gCCGCaaa-CGacCGCCA----AUGUUGGCC- -5'
30105 3' -53.3 NC_006273.1 + 178535 0.66 0.99405
Target:  5'- uGGCGgcgGC-GGUGGUagcgGCAGCCu- -3'
miRNA:   3'- gCCGCaaaCGaCCGCCAa---UGUUGGcc -5'
30105 3' -53.3 NC_006273.1 + 189964 0.66 0.99405
Target:  5'- cCGGCGUgggcgGCUcGCGGa---GACUGGg -3'
miRNA:   3'- -GCCGCAaa---CGAcCGCCaaugUUGGCC- -5'
30105 3' -53.3 NC_006273.1 + 219009 0.66 0.99405
Target:  5'- aCGGCGUcugugGCUGaCGGUaUACGGCuuCGGu -3'
miRNA:   3'- -GCCGCAaa---CGACcGCCA-AUGUUG--GCC- -5'
30105 3' -53.3 NC_006273.1 + 21533 0.66 0.99371
Target:  5'- cCGGCGggcGCUGGCGuuucgaggacgGCGGCgCGGc -3'
miRNA:   3'- -GCCGCaaaCGACCGCcaa--------UGUUG-GCC- -5'
30105 3' -53.3 NC_006273.1 + 8459 0.66 0.99317
Target:  5'- -aGCGUUgccguaGCUGGCGGUcccgUAACCGc -3'
miRNA:   3'- gcCGCAAa-----CGACCGCCAau--GUUGGCc -5'
30105 3' -53.3 NC_006273.1 + 158643 0.66 0.99317
Target:  5'- aCGGUGgcUUGUuuaucgcuUGGCGGUUACGAgCa- -3'
miRNA:   3'- -GCCGCa-AACG--------ACCGCCAAUGUUgGcc -5'
30105 3' -53.3 NC_006273.1 + 150217 0.66 0.992189
Target:  5'- gGGUGcgcucGCUGGCGGUUgacgcGCAACaCGc -3'
miRNA:   3'- gCCGCaaa--CGACCGCCAA-----UGUUG-GCc -5'
30105 3' -53.3 NC_006273.1 + 145625 0.66 0.992189
Target:  5'- gCGGCGgucgUGgUGGUGGgggugGCGGggauuCCGGg -3'
miRNA:   3'- -GCCGCaa--ACgACCGCCaa---UGUU-----GGCC- -5'
30105 3' -53.3 NC_006273.1 + 206503 0.66 0.992189
Target:  5'- cCGGCGUc-GCUGGCgcuuGGUgcgcgACGAaggaCGGg -3'
miRNA:   3'- -GCCGCAaaCGACCG----CCAa----UGUUg---GCC- -5'
30105 3' -53.3 NC_006273.1 + 16997 0.66 0.992189
Target:  5'- gCGGCaGUUUcGCUGGCucuGUcgagGCGACCGu -3'
miRNA:   3'- -GCCG-CAAA-CGACCGc--CAa---UGUUGGCc -5'
30105 3' -53.3 NC_006273.1 + 163076 0.66 0.992189
Target:  5'- aGGCGgcgGCgacGGCGGcgGCuGCgGGg -3'
miRNA:   3'- gCCGCaaaCGa--CCGCCaaUGuUGgCC- -5'
30105 3' -53.3 NC_006273.1 + 46851 0.66 0.991767
Target:  5'- uCGGCGUgcuaaaacgagcGCUGGUccGGcUGC-ACCGGg -3'
miRNA:   3'- -GCCGCAaa----------CGACCG--CCaAUGuUGGCC- -5'
30105 3' -53.3 NC_006273.1 + 103892 0.66 0.9911
Target:  5'- uCGGUGUagucGC-GGCGGUUGCGcGCCa- -3'
miRNA:   3'- -GCCGCAaa--CGaCCGCCAAUGU-UGGcc -5'
30105 3' -53.3 NC_006273.1 + 166497 0.66 0.9911
Target:  5'- aCGGUaguGUUUGUcgUGGCGGcgGCAGCgGu -3'
miRNA:   3'- -GCCG---CAAACG--ACCGCCaaUGUUGgCc -5'
30105 3' -53.3 NC_006273.1 + 33287 0.66 0.9911
Target:  5'- gCGGCGgcagcgGUUGGCguGGUUGCucAGCuCGGc -3'
miRNA:   3'- -GCCGCaaa---CGACCG--CCAAUG--UUG-GCC- -5'
30105 3' -53.3 NC_006273.1 + 124256 0.66 0.9911
Target:  5'- uGGUGUcUGCgGGCGcGagAgGGCCGGc -3'
miRNA:   3'- gCCGCAaACGaCCGC-CaaUgUUGGCC- -5'
30105 3' -53.3 NC_006273.1 + 213071 0.66 0.9911
Target:  5'- gCGGCGUUcGUUGGCGcc-GCuGCCGc -3'
miRNA:   3'- -GCCGCAAaCGACCGCcaaUGuUGGCc -5'
30105 3' -53.3 NC_006273.1 + 45564 0.66 0.9911
Target:  5'- cCGGCGUg-GCcgaGGCGGUacaagcugccgUGCAGgCGGc -3'
miRNA:   3'- -GCCGCAaaCGa--CCGCCA-----------AUGUUgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.