miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30105 5' -60.1 NC_006273.1 + 42285 0.66 0.859623
Target:  5'- cGCCGGa---GACCCGCgcuCUCCUGUg -3'
miRNA:   3'- cCGGCCguuaUUGGGCGac-GGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 194031 0.66 0.859623
Target:  5'- uGGCCGcGCGA--ACgCGCguggGCCCUCa- -3'
miRNA:   3'- -CCGGC-CGUUauUGgGCGa---CGGGGGcg -5'
30105 5' -60.1 NC_006273.1 + 80149 0.66 0.859623
Target:  5'- aGCCGcGCGAUGGCCC-C-GgCCUCGUa -3'
miRNA:   3'- cCGGC-CGUUAUUGGGcGaCgGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 149778 0.66 0.859623
Target:  5'- gGGCUauGGCAagGUGAUCCGUUGCaUCaaaaCGCa -3'
miRNA:   3'- -CCGG--CCGU--UAUUGGGCGACG-GGg---GCG- -5'
30105 5' -60.1 NC_006273.1 + 198933 0.66 0.859623
Target:  5'- aGCC-GCua-AGgCCGCaUGCCCCUGCc -3'
miRNA:   3'- cCGGcCGuuaUUgGGCG-ACGGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 113330 0.66 0.859623
Target:  5'- uGGUCGGCAAgcUGGgUCGCgacGUgCCCGUc -3'
miRNA:   3'- -CCGGCCGUU--AUUgGGCGa--CGgGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 194339 0.66 0.859623
Target:  5'- -cCCGGCAcgcaacAGCCCGCca-UCCCGCg -3'
miRNA:   3'- ccGGCCGUua----UUGGGCGacgGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 234277 0.66 0.859623
Target:  5'- -cCCGGCAcgcaacAGCCCGCca-UCCCGCg -3'
miRNA:   3'- ccGGCCGUua----UUGGGCGacgGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 85789 0.66 0.859623
Target:  5'- cGGCagCGGCAucuagaCCGCcGCCaCUCGCg -3'
miRNA:   3'- -CCG--GCCGUuauug-GGCGaCGG-GGGCG- -5'
30105 5' -60.1 NC_006273.1 + 14080 0.66 0.857446
Target:  5'- cGGCCGGggcugugaaccgcuCAGUGgcucggaccGCCgGCUGUUUCUGCg -3'
miRNA:   3'- -CCGGCC--------------GUUAU---------UGGgCGACGGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 102235 0.66 0.857446
Target:  5'- cGUCGaGCAAgagcagcuucuuagcACCCGCcaGCCCCaCGCa -3'
miRNA:   3'- cCGGC-CGUUau-------------UGGGCGa-CGGGG-GCG- -5'
30105 5' -60.1 NC_006273.1 + 137602 0.66 0.852304
Target:  5'- uGGUCGGCAAgagccggaAACaCCGCgaguaucggGCCgUCGCu -3'
miRNA:   3'- -CCGGCCGUUa-------UUG-GGCGa--------CGGgGGCG- -5'
30105 5' -60.1 NC_006273.1 + 113277 0.66 0.852304
Target:  5'- --gCGGCGAUAcgCCGgUGCUgCCGCa -3'
miRNA:   3'- ccgGCCGUUAUugGGCgACGGgGGCG- -5'
30105 5' -60.1 NC_006273.1 + 142254 0.66 0.852304
Target:  5'- cGuuGGUGucgcUGGCCCGCa--CCCCGCu -3'
miRNA:   3'- cCggCCGUu---AUUGGGCGacgGGGGCG- -5'
30105 5' -60.1 NC_006273.1 + 4911 0.66 0.852304
Target:  5'- aGCCGGcCGAUucGCCCGCcgggGCUUCUGg -3'
miRNA:   3'- cCGGCC-GUUAu-UGGGCGa---CGGGGGCg -5'
30105 5' -60.1 NC_006273.1 + 173256 0.66 0.852304
Target:  5'- -cCCGGCG--GACCagcggcuGCUgGCCCCCGg -3'
miRNA:   3'- ccGGCCGUuaUUGGg------CGA-CGGGGGCg -5'
30105 5' -60.1 NC_006273.1 + 94608 0.66 0.852304
Target:  5'- cGCCGGCuu---CCCGgU-CCaCCCGCc -3'
miRNA:   3'- cCGGCCGuuauuGGGCgAcGG-GGGCG- -5'
30105 5' -60.1 NC_006273.1 + 137177 0.66 0.852304
Target:  5'- aGCCGGg---GugCCGCcGCUgCCGCu -3'
miRNA:   3'- cCGGCCguuaUugGGCGaCGGgGGCG- -5'
30105 5' -60.1 NC_006273.1 + 38178 0.66 0.852304
Target:  5'- cGGaCGGCGGgacgccgAGCCCGC-GCCgcggCCGCu -3'
miRNA:   3'- -CCgGCCGUUa------UUGGGCGaCGGg---GGCG- -5'
30105 5' -60.1 NC_006273.1 + 210400 0.66 0.852304
Target:  5'- uGGCCGGCGAaGAUaag--GCCCaCCGUg -3'
miRNA:   3'- -CCGGCCGUUaUUGggcgaCGGG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.