miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30109 3' -55.7 NC_006273.1 + 29322 0.66 0.976962
Target:  5'- --aGUGCCGACGccGgUGGAGG-ACAUCu -3'
miRNA:   3'- cggCGCGGCUGC--UgACCUCUaUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 162388 0.66 0.976962
Target:  5'- gGCgGUGgCGGCGGCgGGAGcgGCGg- -3'
miRNA:   3'- -CGgCGCgGCUGCUGaCCUCuaUGUgg -5'
30109 3' -55.7 NC_006273.1 + 190456 0.66 0.976962
Target:  5'- aCCGUGCCGA-GACaGaAGuUGCGCCg -3'
miRNA:   3'- cGGCGCGGCUgCUGaCcUCuAUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 185904 0.66 0.976962
Target:  5'- aCCGCGgCGACG--UGGAGA---GCCu -3'
miRNA:   3'- cGGCGCgGCUGCugACCUCUaugUGG- -5'
30109 3' -55.7 NC_006273.1 + 53767 0.66 0.976962
Target:  5'- -aUGCGUCGuaucacGCGAacuaUGGGGcAUACGCCg -3'
miRNA:   3'- cgGCGCGGC------UGCUg---ACCUC-UAUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 136047 0.66 0.976962
Target:  5'- gGCCGCGuuCCGA--GC-GGAGAUgaggacgacGCACCg -3'
miRNA:   3'- -CGGCGC--GGCUgcUGaCCUCUA---------UGUGG- -5'
30109 3' -55.7 NC_006273.1 + 101787 0.66 0.976962
Target:  5'- aGCCaccaGgGCCGGCGACUG-----ACGCCg -3'
miRNA:   3'- -CGG----CgCGGCUGCUGACcucuaUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 154421 0.66 0.976962
Target:  5'- gGCCGUGcCCGACGACagcucgUGGcc--GCGCUa -3'
miRNA:   3'- -CGGCGC-GGCUGCUG------ACCucuaUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 162761 0.66 0.976962
Target:  5'- cCCGCGCUGAU--UUGGccGUAUACCa -3'
miRNA:   3'- cGGCGCGGCUGcuGACCucUAUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 112561 0.66 0.97673
Target:  5'- cGCCGCgucagcggccGCCGGugcuucuucuaccUGGCUGGcGcaGUGCGCCg -3'
miRNA:   3'- -CGGCG----------CGGCU-------------GCUGACCuC--UAUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 71801 0.66 0.974556
Target:  5'- aGCCGCGgCGgugGCGACaacGGGGuu-UACCa -3'
miRNA:   3'- -CGGCGCgGC---UGCUGa--CCUCuauGUGG- -5'
30109 3' -55.7 NC_006273.1 + 155473 0.66 0.974556
Target:  5'- cGCCgGCGCaGACGuacacGCUcGAGGgcUACACCa -3'
miRNA:   3'- -CGG-CGCGgCUGC-----UGAcCUCU--AUGUGG- -5'
30109 3' -55.7 NC_006273.1 + 174665 0.66 0.974556
Target:  5'- aGCgGCGCUGACaGCauacGGGGAggagACACa -3'
miRNA:   3'- -CGgCGCGGCUGcUGa---CCUCUa---UGUGg -5'
30109 3' -55.7 NC_006273.1 + 193599 0.66 0.974556
Target:  5'- uGCCGCGuuGgGCGggcaggGCUGGaAGAggugGCGCa -3'
miRNA:   3'- -CGGCGCggC-UGC------UGACC-UCUa---UGUGg -5'
30109 3' -55.7 NC_006273.1 + 60512 0.66 0.974556
Target:  5'- uCCGCGCUG-CGGCUuGGAauccuaccuGGccgGCACCg -3'
miRNA:   3'- cGGCGCGGCuGCUGA-CCU---------CUa--UGUGG- -5'
30109 3' -55.7 NC_006273.1 + 111537 0.66 0.974556
Target:  5'- uGCCGU-CCGG-GugUGGGGAcgACGCUg -3'
miRNA:   3'- -CGGCGcGGCUgCugACCUCUa-UGUGG- -5'
30109 3' -55.7 NC_006273.1 + 112197 0.66 0.974556
Target:  5'- aGCgCGUGCuuCGGCGguuGCUGGAGG-ACGCg -3'
miRNA:   3'- -CG-GCGCG--GCUGC---UGACCUCUaUGUGg -5'
30109 3' -55.7 NC_006273.1 + 61161 0.66 0.974556
Target:  5'- aGCCGCGCaUGACGcaggugagcaACgaGGuGAUGC-CCa -3'
miRNA:   3'- -CGGCGCG-GCUGC----------UGa-CCuCUAUGuGG- -5'
30109 3' -55.7 NC_006273.1 + 147212 0.66 0.974305
Target:  5'- cCCGCGuCCGACGAUgugcucuucuucgUGGAug-GCugCg -3'
miRNA:   3'- cGGCGC-GGCUGCUG-------------ACCUcuaUGugG- -5'
30109 3' -55.7 NC_006273.1 + 70665 0.66 0.974305
Target:  5'- uGCUGCGCgacacggUGGCGGCggUGGAGGgcGCGCg -3'
miRNA:   3'- -CGGCGCG-------GCUGCUG--ACCUCUa-UGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.