miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30109 5' -51.2 NC_006273.1 + 152339 0.66 0.99783
Target:  5'- uUGGUggcggcAGAGC-CCGucgUAGCGCaGAa -3'
miRNA:   3'- gACCA------UCUCGuGGCuuaAUCGCGaCU- -5'
30109 5' -51.2 NC_006273.1 + 145311 0.66 0.99783
Target:  5'- cCUGGUGGGcuGCGCCGc---GGgGCUGu -3'
miRNA:   3'- -GACCAUCU--CGUGGCuuaaUCgCGACu -5'
30109 5' -51.2 NC_006273.1 + 207053 0.66 0.997427
Target:  5'- ----cAGGGUcCCGggUcGGCGCUGAc -3'
miRNA:   3'- gaccaUCUCGuGGCuuAaUCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 66760 0.66 0.997427
Target:  5'- gCUGGUGcgcgacccGGGCAgCCGcggcucGGCGCUGAc -3'
miRNA:   3'- -GACCAU--------CUCGU-GGCuuaa--UCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 115557 0.66 0.997427
Target:  5'- aUGG-GGGGgACCGGGguggUGGUGCUGc -3'
miRNA:   3'- gACCaUCUCgUGGCUUa---AUCGCGACu -5'
30109 5' -51.2 NC_006273.1 + 101201 0.66 0.996964
Target:  5'- -gGGUuaaGGGGCACCGAGgcGGaCGCg-- -3'
miRNA:   3'- gaCCA---UCUCGUGGCUUaaUC-GCGacu -5'
30109 5' -51.2 NC_006273.1 + 104320 0.66 0.996433
Target:  5'- aCUGGcgauGAGCGCCGAGagggggauGgGCUGGc -3'
miRNA:   3'- -GACCau--CUCGUGGCUUaau-----CgCGACU- -5'
30109 5' -51.2 NC_006273.1 + 111424 0.66 0.996433
Target:  5'- -aGGaaGGAGCAcCCGggUgUGGCGCUa- -3'
miRNA:   3'- gaCCa-UCUCGU-GGCuuA-AUCGCGAcu -5'
30109 5' -51.2 NC_006273.1 + 69649 0.66 0.996319
Target:  5'- uCUGGU-GAGCACCGccuggcaccAGCGCa-- -3'
miRNA:   3'- -GACCAuCUCGUGGCuuaa-----UCGCGacu -5'
30109 5' -51.2 NC_006273.1 + 72974 0.66 0.995829
Target:  5'- uUGGcGGAGU-CCGAgg-AGUGCUGAc -3'
miRNA:   3'- gACCaUCUCGuGGCUuaaUCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 229098 0.67 0.995497
Target:  5'- cCUGGUGGAaacgacuGCGCCacaguacccGGCGCUGGu -3'
miRNA:   3'- -GACCAUCU-------CGUGGcuuaa----UCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 169355 0.67 0.995143
Target:  5'- -aGGcgauGAGCGCCGGGcc-GUGCUGAc -3'
miRNA:   3'- gaCCau--CUCGUGGCUUaauCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 81827 0.67 0.994369
Target:  5'- -cGGUAGAuggcuugaccuGCGCCGAGcgAGUGCgguUGAg -3'
miRNA:   3'- gaCCAUCU-----------CGUGGCUUaaUCGCG---ACU- -5'
30109 5' -51.2 NC_006273.1 + 64668 0.67 0.994118
Target:  5'- cCUGGguggaacGAGCGCCGuccugcagaccgaGGCGCUGGa -3'
miRNA:   3'- -GACCau-----CUCGUGGCuuaa---------UCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 118685 0.67 0.993498
Target:  5'- aCUGcGUGGGGUGCUGGAaguggaagcGGUGCUGAu -3'
miRNA:   3'- -GAC-CAUCUCGUGGCUUaa-------UCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 143517 0.67 0.993498
Target:  5'- cCUGGgcGAGCAUgGcgcc-GCGCUGGu -3'
miRNA:   3'- -GACCauCUCGUGgCuuaauCGCGACU- -5'
30109 5' -51.2 NC_006273.1 + 15064 0.67 0.992521
Target:  5'- -aGGUGGAGaGCCGucGUUGGUGgUGGg -3'
miRNA:   3'- gaCCAUCUCgUGGCu-UAAUCGCgACU- -5'
30109 5' -51.2 NC_006273.1 + 171072 0.67 0.991432
Target:  5'- -cGGuUGGGGCGCCGAuucccagGGCGCc-- -3'
miRNA:   3'- gaCC-AUCUCGUGGCUuaa----UCGCGacu -5'
30109 5' -51.2 NC_006273.1 + 47321 0.68 0.990093
Target:  5'- aUGGUGGAcgagacgagacccGCGCCGcc--GGCGCUGu -3'
miRNA:   3'- gACCAUCU-------------CGUGGCuuaaUCGCGACu -5'
30109 5' -51.2 NC_006273.1 + 83871 0.68 0.987859
Target:  5'- -cGGUAGAGCGCgUGAcccugcccuaucuguGUcacauccUGGCGCUGGg -3'
miRNA:   3'- gaCCAUCUCGUG-GCU---------------UA-------AUCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.