miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3011 3' -59.5 NC_001493.1 + 126179 1.06 0.001938
Target:  5'- aUCUCCGGGUCUCGACCCGAUCCCGAAa -3'
miRNA:   3'- -AGAGGCCCAGAGCUGGGCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 10624 1.06 0.001938
Target:  5'- aUCUCCGGGUCUCGACCCGAUCCCGAAa -3'
miRNA:   3'- -AGAGGCCCAGAGCUGGGCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 126283 0.96 0.01018
Target:  5'- aUCUCCGGGUCUCGACCaGAUCCCGAAa -3'
miRNA:   3'- -AGAGGCCCAGAGCUGGgCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 10729 0.96 0.01018
Target:  5'- aUCUCCGGGUCUCGACCaGAUCCCGAAa -3'
miRNA:   3'- -AGAGGCCCAGAGCUGGgCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 10701 0.86 0.051178
Target:  5'- aUCUCUaaGUCUCGACCCGAUCCCGAAa -3'
miRNA:   3'- -AGAGGccCAGAGCUGGGCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 126255 0.75 0.265903
Target:  5'- aUCUCUaaGUCUC-ACCCGAUCCCGAAa -3'
miRNA:   3'- -AGAGGccCAGAGcUGGGCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 12896 0.73 0.356356
Target:  5'- ----gGGGUCUCGguggagagcGCCCGAUCCCGGu -3'
miRNA:   3'- agaggCCCAGAGC---------UGGGCUAGGGCUu -5'
3011 3' -59.5 NC_001493.1 + 128450 0.73 0.356356
Target:  5'- ----gGGGUCUCGguggagagcGCCCGAUCCCGGu -3'
miRNA:   3'- agaggCCCAGAGC---------UGGGCUAGGGCUu -5'
3011 3' -59.5 NC_001493.1 + 26376 0.73 0.364147
Target:  5'- --cCCGGGUUUCGGCCCcagCCCGGu -3'
miRNA:   3'- agaGGCCCAGAGCUGGGcuaGGGCUu -5'
3011 3' -59.5 NC_001493.1 + 51641 0.73 0.364147
Target:  5'- gCUCCGGGUCUCcGCuuGAUCCa--- -3'
miRNA:   3'- aGAGGCCCAGAGcUGggCUAGGgcuu -5'
3011 3' -59.5 NC_001493.1 + 10829 0.72 0.388219
Target:  5'- cUCUCCGGGUgUCGaACCCGGggagCUCGc- -3'
miRNA:   3'- -AGAGGCCCAgAGC-UGGGCUa---GGGCuu -5'
3011 3' -59.5 NC_001493.1 + 126383 0.72 0.388219
Target:  5'- cUCUCCGGGUgUCGaACCCGGggagCUCGc- -3'
miRNA:   3'- -AGAGGCCCAgAGC-UGGGCUa---GGGCuu -5'
3011 3' -59.5 NC_001493.1 + 54763 0.71 0.430588
Target:  5'- cUCUCUGGG-CggGGCCCGuUCCCGGGu -3'
miRNA:   3'- -AGAGGCCCaGagCUGGGCuAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 110501 0.71 0.439383
Target:  5'- uUCUUCGGGaUCUCGACCCa---CCGAu -3'
miRNA:   3'- -AGAGGCCC-AGAGCUGGGcuagGGCUu -5'
3011 3' -59.5 NC_001493.1 + 88130 0.71 0.442929
Target:  5'- aCUCCGaGUCUCGAUcgaucgcuccaggcgCCGAUCCCGu- -3'
miRNA:   3'- aGAGGCcCAGAGCUG---------------GGCUAGGGCuu -5'
3011 3' -59.5 NC_001493.1 + 32619 0.7 0.507417
Target:  5'- -gUCCGGGgccauauccgcgCGugCCGAUCCCGGu -3'
miRNA:   3'- agAGGCCCaga---------GCugGGCUAGGGCUu -5'
3011 3' -59.5 NC_001493.1 + 22182 0.7 0.522727
Target:  5'- aCUCUGGGgcaccugCUaaccCGAUCCGAUCCCGu- -3'
miRNA:   3'- aGAGGCCCa------GA----GCUGGGCUAGGGCuu -5'
3011 3' -59.5 NC_001493.1 + 126858 0.69 0.542107
Target:  5'- cCUCgGgGGUCaUCGAgcCCUGGUCCCGGGa -3'
miRNA:   3'- aGAGgC-CCAG-AGCU--GGGCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 11304 0.69 0.542107
Target:  5'- cCUCgGgGGUCaUCGAgcCCUGGUCCCGGGa -3'
miRNA:   3'- aGAGgC-CCAG-AGCU--GGGCUAGGGCUU- -5'
3011 3' -59.5 NC_001493.1 + 65048 0.69 0.581522
Target:  5'- -gUCCGuGGuggacuucuaUCUCGACCCGAaCCUGAu -3'
miRNA:   3'- agAGGC-CC----------AGAGCUGGGCUaGGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.