miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30118 3' -54.7 NC_006273.1 + 30665 0.66 0.981728
Target:  5'- cGCCGGGcGGCUuccugcGGCCG--GCCGcggugCCGg -3'
miRNA:   3'- -CGGUCU-CCGAu-----UCGGCuuUGGCa----GGC- -5'
30118 3' -54.7 NC_006273.1 + 194349 0.66 0.981728
Target:  5'- aGUCAGAcGCccgagcAGUCGAcGCCGUCCa -3'
miRNA:   3'- -CGGUCUcCGau----UCGGCUuUGGCAGGc -5'
30118 3' -54.7 NC_006273.1 + 211088 0.66 0.981728
Target:  5'- aGCCGGAGGCUAuauGaCCGcg--CGUCUa -3'
miRNA:   3'- -CGGUCUCCGAUu--C-GGCuuugGCAGGc -5'
30118 3' -54.7 NC_006273.1 + 164566 0.66 0.981728
Target:  5'- cGCCAGcgugccgaAGGCcAGGCCGcuggcgcuGCCGUCg- -3'
miRNA:   3'- -CGGUC--------UCCGaUUCGGCuu------UGGCAGgc -5'
30118 3' -54.7 NC_006273.1 + 139325 0.66 0.981728
Target:  5'- gGCCAGGGGgUA--CCGAGGCgGUgcCCGc -3'
miRNA:   3'- -CGGUCUCCgAUucGGCUUUGgCA--GGC- -5'
30118 3' -54.7 NC_006273.1 + 23688 0.66 0.980507
Target:  5'- cCCAGAGGCcc-GCCGAgauucccaaAagaagaaaaaaggcgGCCGUCCu -3'
miRNA:   3'- cGGUCUCCGauuCGGCU---------U---------------UGGCAGGc -5'
30118 3' -54.7 NC_006273.1 + 90928 0.66 0.980507
Target:  5'- cGCCGGcgcgcgagcccguguAGuGC-GAGCCGccgccacccGAACCGUCCGc -3'
miRNA:   3'- -CGGUC---------------UC-CGaUUCGGC---------UUUGGCAGGC- -5'
30118 3' -54.7 NC_006273.1 + 93288 0.66 0.979659
Target:  5'- gGCC-GAGGUUucgcggcagcgcAAGCCGugguAACCGUCg- -3'
miRNA:   3'- -CGGuCUCCGA------------UUCGGCu---UUGGCAGgc -5'
30118 3' -54.7 NC_006273.1 + 121 0.66 0.979659
Target:  5'- uGUCGGGGuGUguuGGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUCUC-CGau-UCGGCUUugGCAG-GC- -5'
30118 3' -54.7 NC_006273.1 + 118623 0.66 0.979659
Target:  5'- gGCUGGAGaGCgagAGGCCGGcguAGCUG-CCGc -3'
miRNA:   3'- -CGGUCUC-CGa--UUCGGCU---UUGGCaGGC- -5'
30118 3' -54.7 NC_006273.1 + 234952 0.66 0.979659
Target:  5'- uGUCGGGGuGUguuGGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUCUC-CGau-UCGGCUUugGCAG-GC- -5'
30118 3' -54.7 NC_006273.1 + 234997 0.66 0.979659
Target:  5'- uGUCGGGGuGUguuGGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUCUC-CGau-UCGGCUUugGCAG-GC- -5'
30118 3' -54.7 NC_006273.1 + 195059 0.66 0.979659
Target:  5'- uGUCGGGGuGUguuGGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUCUC-CGau-UCGGCUUugGCAG-GC- -5'
30118 3' -54.7 NC_006273.1 + 195014 0.66 0.979659
Target:  5'- uGUCGGGGuGUguuGGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUCUC-CGau-UCGGCUUugGCAG-GC- -5'
30118 3' -54.7 NC_006273.1 + 69496 0.66 0.979659
Target:  5'- aGCCAucacGGU--AGCCGugGCCGUCUGu -3'
miRNA:   3'- -CGGUcu--CCGauUCGGCuuUGGCAGGC- -5'
30118 3' -54.7 NC_006273.1 + 166 0.66 0.979659
Target:  5'- uGUCGGGGuGUguuGGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUCUC-CGau-UCGGCUUugGCAG-GC- -5'
30118 3' -54.7 NC_006273.1 + 50751 0.66 0.975007
Target:  5'- gGCCGGuaAGGUUAAGCgucAGCUGUCCc -3'
miRNA:   3'- -CGGUC--UCCGAUUCGgcuUUGGCAGGc -5'
30118 3' -54.7 NC_006273.1 + 14081 0.66 0.974756
Target:  5'- gGCCGG-GGCUGugaaccgcucaguGGCUcGGACCG-CCGg -3'
miRNA:   3'- -CGGUCuCCGAU-------------UCGGcUUUGGCaGGC- -5'
30118 3' -54.7 NC_006273.1 + 21485 0.66 0.97241
Target:  5'- aGCUGGuGGCUcauGCCGccACCGguggCCGa -3'
miRNA:   3'- -CGGUCuCCGAuu-CGGCuuUGGCa---GGC- -5'
30118 3' -54.7 NC_006273.1 + 168607 0.66 0.97241
Target:  5'- gGCCAGugucAGcGCcGAGCCGcgGCUGcCCGg -3'
miRNA:   3'- -CGGUC----UC-CGaUUCGGCuuUGGCaGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.