miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30118 5' -50.1 NC_006273.1 + 83586 0.66 0.999214
Target:  5'- cGGCGCGAGgacUCCaug--AGCCUg- -3'
miRNA:   3'- -CCGCGCUCaaaAGGcugaaUCGGAaa -5'
30118 5' -50.1 NC_006273.1 + 120829 0.66 0.999214
Target:  5'- gGGCGCGAcGg---UgGACUcGGCCUUa -3'
miRNA:   3'- -CCGCGCU-CaaaaGgCUGAaUCGGAAa -5'
30118 5' -50.1 NC_006273.1 + 187205 0.66 0.998834
Target:  5'- gGGUGCGGGUgg-CgGGCUgcgucGCCUUc -3'
miRNA:   3'- -CCGCGCUCAaaaGgCUGAau---CGGAAa -5'
30118 5' -50.1 NC_006273.1 + 140915 0.66 0.998788
Target:  5'- cGGUGCGGGggucccagcCCGGCcgGGCCg-- -3'
miRNA:   3'- -CCGCGCUCaaaa-----GGCUGaaUCGGaaa -5'
30118 5' -50.1 NC_006273.1 + 51790 0.67 0.997976
Target:  5'- uGGCGCGcacguagcuGUUcaCCGACUUGGCa--- -3'
miRNA:   3'- -CCGCGCu--------CAAaaGGCUGAAUCGgaaa -5'
30118 5' -50.1 NC_006273.1 + 190747 0.67 0.997592
Target:  5'- uGGaCGCG-GUUUUCUGGCc--GCCUUUc -3'
miRNA:   3'- -CC-GCGCuCAAAAGGCUGaauCGGAAA- -5'
30118 5' -50.1 NC_006273.1 + 100271 0.68 0.99606
Target:  5'- cGGCGCGGGc---CUGACUccucGGCCUg- -3'
miRNA:   3'- -CCGCGCUCaaaaGGCUGAa---UCGGAaa -5'
30118 5' -50.1 NC_006273.1 + 39594 0.68 0.995399
Target:  5'- aGCGCGGGUacgaccUgCGAUUUAGCCg-- -3'
miRNA:   3'- cCGCGCUCAaa----AgGCUGAAUCGGaaa -5'
30118 5' -50.1 NC_006273.1 + 193694 0.68 0.994651
Target:  5'- gGGCGaCGAGgaUUCCGAC--AGCUc-- -3'
miRNA:   3'- -CCGC-GCUCaaAAGGCUGaaUCGGaaa -5'
30118 5' -50.1 NC_006273.1 + 140875 0.68 0.993807
Target:  5'- gGGCGCGAGgug-CCcGCcUGGCCg-- -3'
miRNA:   3'- -CCGCGCUCaaaaGGcUGaAUCGGaaa -5'
30118 5' -50.1 NC_006273.1 + 190492 0.68 0.99286
Target:  5'- uGGCGCGcAGgggcUCCGACgUGGCgUUa -3'
miRNA:   3'- -CCGCGC-UCaaa-AGGCUGaAUCGgAAa -5'
30118 5' -50.1 NC_006273.1 + 189005 0.7 0.984514
Target:  5'- cGGCGCGGGUa--UCGGCgucgggGGCCUg- -3'
miRNA:   3'- -CCGCGCUCAaaaGGCUGaa----UCGGAaa -5'
30118 5' -50.1 NC_006273.1 + 45661 0.71 0.97025
Target:  5'- cGGUGUGAuaaggaaUUUUCCGACUUGGCUc-- -3'
miRNA:   3'- -CCGCGCUc------AAAAGGCUGAAUCGGaaa -5'
30118 5' -50.1 NC_006273.1 + 121185 0.71 0.967173
Target:  5'- cGGCGCGAucgg-CCGACauagagUAGCCUUc -3'
miRNA:   3'- -CCGCGCUcaaaaGGCUGa-----AUCGGAAa -5'
30118 5' -50.1 NC_006273.1 + 36484 0.71 0.960359
Target:  5'- uGGCGUGcuGUUUUCCGugUU-GCCg-- -3'
miRNA:   3'- -CCGCGCu-CAAAAGGCugAAuCGGaaa -5'
30118 5' -50.1 NC_006273.1 + 216013 0.72 0.939228
Target:  5'- uGGUcgGCGAGUcUUCCGACggguagggAGCCUg- -3'
miRNA:   3'- -CCG--CGCUCAaAAGGCUGaa------UCGGAaa -5'
30118 5' -50.1 NC_006273.1 + 124266 0.83 0.472533
Target:  5'- gGGCGCGAGagggCCGGCUcAGCCUUUa -3'
miRNA:   3'- -CCGCGCUCaaaaGGCUGAaUCGGAAA- -5'
30118 5' -50.1 NC_006273.1 + 98150 1.09 0.015822
Target:  5'- gGGCGCGAGUUUUCCGACUUAGCCUUUg -3'
miRNA:   3'- -CCGCGCUCAAAAGGCUGAAUCGGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.