miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30119 3' -57 NC_006273.1 + 90571 0.66 0.950429
Target:  5'- cGUUCACCGCGaa-ACUCCacgcccGGCACCg -3'
miRNA:   3'- uCGAGUGGUGCcacUGAGGc-----CUGUGG- -5'
30119 3' -57 NC_006273.1 + 116397 0.66 0.950031
Target:  5'- cGGCUUcgaggaaGCCAgCGGcGACgaggacUCGGACACCc -3'
miRNA:   3'- -UCGAG-------UGGU-GCCaCUGa-----GGCCUGUGG- -5'
30119 3' -57 NC_006273.1 + 152157 0.66 0.950031
Target:  5'- cAGUUCACCuaugacacguugcGCGGUuACaucaaCCGGGCGCUg -3'
miRNA:   3'- -UCGAGUGG-------------UGCCAcUGa----GGCCUGUGG- -5'
30119 3' -57 NC_006273.1 + 121995 0.66 0.946353
Target:  5'- cAGCugauugUCGCCGCGGUGGCauggcgucgagUCgGGcguguacugcgACACCa -3'
miRNA:   3'- -UCG------AGUGGUGCCACUG-----------AGgCC-----------UGUGG- -5'
30119 3' -57 NC_006273.1 + 1030 0.66 0.946353
Target:  5'- uGCUgCGCCuACGGcGACgCCGGGCcacggcguccACCg -3'
miRNA:   3'- uCGA-GUGG-UGCCaCUGaGGCCUG----------UGG- -5'
30119 3' -57 NC_006273.1 + 98135 0.66 0.946353
Target:  5'- cGCUCucguuCCGCGGUccgaaaagcaGCUCCugcgguuuGGGCGCCg -3'
miRNA:   3'- uCGAGu----GGUGCCAc---------UGAGG--------CCUGUGG- -5'
30119 3' -57 NC_006273.1 + 35314 0.66 0.946353
Target:  5'- cGGaCUCuaacacccagGCCGCGGgauaugGACUCgGaGGCGCCc -3'
miRNA:   3'- -UC-GAG----------UGGUGCCa-----CUGAGgC-CUGUGG- -5'
30119 3' -57 NC_006273.1 + 195923 0.66 0.946353
Target:  5'- uGCUgCGCCuACGGcGACgCCGGGCcacggcguccACCg -3'
miRNA:   3'- uCGA-GUGG-UGCCaCUGaGGCCUG----------UGG- -5'
30119 3' -57 NC_006273.1 + 96028 0.66 0.946353
Target:  5'- gAGCggCGCCAUcuuggaggaggGGcGAgUCgCGGGCACCg -3'
miRNA:   3'- -UCGa-GUGGUG-----------CCaCUgAG-GCCUGUGG- -5'
30119 3' -57 NC_006273.1 + 88577 0.66 0.946353
Target:  5'- ---gCGCCACaGUGGCggCCauGGGCGCCg -3'
miRNA:   3'- ucgaGUGGUGcCACUGa-GG--CCUGUGG- -5'
30119 3' -57 NC_006273.1 + 162993 0.66 0.945934
Target:  5'- aGGCUCgacggcggcagcuGCgGCGGUagGACaCgCGGGCGCCg -3'
miRNA:   3'- -UCGAG-------------UGgUGCCA--CUGaG-GCCUGUGG- -5'
30119 3' -57 NC_006273.1 + 118039 0.66 0.945089
Target:  5'- cGGCUCcgagggagaaagcgACgGCGGUGAUUCCgcgggaagaacGGACGgCg -3'
miRNA:   3'- -UCGAG--------------UGgUGCCACUGAGG-----------CCUGUgG- -5'
30119 3' -57 NC_006273.1 + 184618 0.66 0.942063
Target:  5'- cGGUacaUC-CCGCGucGUGAUUCCGuaGACGCCa -3'
miRNA:   3'- -UCG---AGuGGUGC--CACUGAGGC--CUGUGG- -5'
30119 3' -57 NC_006273.1 + 16482 0.66 0.942063
Target:  5'- uGGCgaaCACCACGGacgcgacgUGaACUuucauacacCUGGACGCCa -3'
miRNA:   3'- -UCGa--GUGGUGCC--------AC-UGA---------GGCCUGUGG- -5'
30119 3' -57 NC_006273.1 + 102176 0.66 0.937556
Target:  5'- aGGCgagCACCuCGGUGAgaCCGcGGCGUCg -3'
miRNA:   3'- -UCGa--GUGGuGCCACUgaGGC-CUGUGG- -5'
30119 3' -57 NC_006273.1 + 71800 0.66 0.937556
Target:  5'- cAGC-CGCgGCGGUGGCgacaaCGGGguuUACCa -3'
miRNA:   3'- -UCGaGUGgUGCCACUGag---GCCU---GUGG- -5'
30119 3' -57 NC_006273.1 + 199468 0.66 0.937556
Target:  5'- uGCgCGCCACGGcgggucguUGGCUCCcgcugugcuGGcCGCCg -3'
miRNA:   3'- uCGaGUGGUGCC--------ACUGAGG---------CCuGUGG- -5'
30119 3' -57 NC_006273.1 + 82833 0.66 0.937556
Target:  5'- gGGCUacuGCUGCaGGUGGCcgagcgcCUGGGCGCCg -3'
miRNA:   3'- -UCGAg--UGGUG-CCACUGa------GGCCUGUGG- -5'
30119 3' -57 NC_006273.1 + 56289 0.66 0.937556
Target:  5'- gGGCggguacgGCCGCGG-GugUCCgcGGACACg -3'
miRNA:   3'- -UCGag-----UGGUGCCaCugAGG--CCUGUGg -5'
30119 3' -57 NC_006273.1 + 110938 0.66 0.937556
Target:  5'- uAGCUgGCCA-GGU--CUuuGGAUACCa -3'
miRNA:   3'- -UCGAgUGGUgCCAcuGAggCCUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.