miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30122 3' -60.7 NC_006273.1 + 95045 0.66 0.83265
Target:  5'- -cGGGGGUC-CCUCGGCCuaGCCgccgGCu -3'
miRNA:   3'- gaCCUCUAGuGGGGCCGGc-UGGa---CGc -5'
30122 3' -60.7 NC_006273.1 + 202751 0.66 0.83265
Target:  5'- -cGGccAGGUCAUCCgUGaGUCGGCCUGCu -3'
miRNA:   3'- gaCC--UCUAGUGGG-GC-CGGCUGGACGc -5'
30122 3' -60.7 NC_006273.1 + 230751 0.66 0.83265
Target:  5'- uCUGGGGGcuccgguaccUUACCC--GCCGGCCUGUa -3'
miRNA:   3'- -GACCUCU----------AGUGGGgcCGGCUGGACGc -5'
30122 3' -60.7 NC_006273.1 + 31179 0.66 0.81673
Target:  5'- -cGGAGcgUGCUCCauuGCCGGCCgGCGu -3'
miRNA:   3'- gaCCUCuaGUGGGGc--CGGCUGGaCGC- -5'
30122 3' -60.7 NC_006273.1 + 100448 0.66 0.81673
Target:  5'- gCUGcaauGGUCGCCCCaGCCGuCCUGg- -3'
miRNA:   3'- -GACcu--CUAGUGGGGcCGGCuGGACgc -5'
30122 3' -60.7 NC_006273.1 + 154418 0.66 0.81673
Target:  5'- -aGGAGcUCugCgagCUGGCCGACCcGCu -3'
miRNA:   3'- gaCCUCuAGugG---GGCCGGCUGGaCGc -5'
30122 3' -60.7 NC_006273.1 + 193001 0.66 0.81673
Target:  5'- uUGGGGAUgGCCUCGuGCUcACCgccGCGg -3'
miRNA:   3'- gACCUCUAgUGGGGC-CGGcUGGa--CGC- -5'
30122 3' -60.7 NC_006273.1 + 115687 0.66 0.808545
Target:  5'- gCUGGuAGA-CGCCCUGgagcaGCUGGCCUGUu -3'
miRNA:   3'- -GACC-UCUaGUGGGGC-----CGGCUGGACGc -5'
30122 3' -60.7 NC_006273.1 + 75488 0.67 0.791761
Target:  5'- -aGGAcccgccggCGCUUCGGCCG-CCUGCGa -3'
miRNA:   3'- gaCCUcua-----GUGGGGCCGGCuGGACGC- -5'
30122 3' -60.7 NC_006273.1 + 94243 0.67 0.791761
Target:  5'- -cGGcAGGg--UUCCGGCCGugCUGCGg -3'
miRNA:   3'- gaCC-UCUaguGGGGCCGGCugGACGC- -5'
30122 3' -60.7 NC_006273.1 + 137383 0.67 0.783176
Target:  5'- uUGGAucguccguGAUCGCCgCGGaCG-CCUGCGa -3'
miRNA:   3'- gACCU--------CUAGUGGgGCCgGCuGGACGC- -5'
30122 3' -60.7 NC_006273.1 + 64827 0.67 0.774472
Target:  5'- cCUGGAG-UCGCggUUCGGCCGgACCgUGCa -3'
miRNA:   3'- -GACCUCuAGUG--GGGCCGGC-UGG-ACGc -5'
30122 3' -60.7 NC_006273.1 + 212064 0.67 0.774472
Target:  5'- gUGGGGG-CGCCCaGGCCGuCCcgGUGg -3'
miRNA:   3'- gACCUCUaGUGGGgCCGGCuGGa-CGC- -5'
30122 3' -60.7 NC_006273.1 + 186523 0.67 0.765655
Target:  5'- aCUGGuGAcgacggacUCGCCCCuGGCuaCGcACCUGUGg -3'
miRNA:   3'- -GACCuCU--------AGUGGGG-CCG--GC-UGGACGC- -5'
30122 3' -60.7 NC_006273.1 + 219266 0.67 0.765655
Target:  5'- aUGGug--CugCCgGGCCGcACCUGCa -3'
miRNA:   3'- gACCucuaGugGGgCCGGC-UGGACGc -5'
30122 3' -60.7 NC_006273.1 + 161289 0.67 0.756735
Target:  5'- -aGGAGAUCAagcCCUCGGCCuacggaGugCUGaCGa -3'
miRNA:   3'- gaCCUCUAGU---GGGGCCGG------CugGAC-GC- -5'
30122 3' -60.7 NC_006273.1 + 44722 0.68 0.738611
Target:  5'- gUGGAGGaCGCCgaaccgCCGGCCGAgCUGg- -3'
miRNA:   3'- gACCUCUaGUGG------GGCCGGCUgGACgc -5'
30122 3' -60.7 NC_006273.1 + 178032 0.68 0.738611
Target:  5'- aUGGAGuUCAgCUCGGCCuGCgUGCa -3'
miRNA:   3'- gACCUCuAGUgGGGCCGGcUGgACGc -5'
30122 3' -60.7 NC_006273.1 + 23946 0.68 0.738611
Target:  5'- cCUGuuuAGAUCGCgugguCCgaGGCCGACCUGCu -3'
miRNA:   3'- -GACc--UCUAGUG-----GGg-CCGGCUGGACGc -5'
30122 3' -60.7 NC_006273.1 + 48086 0.68 0.729423
Target:  5'- cCUGGAGcagcCGCCCCGGCaaCGACgCcGCa -3'
miRNA:   3'- -GACCUCua--GUGGGGCCG--GCUG-GaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.