miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 56915 0.66 0.999994
Target:  5'- gACGACaGUgGCGGCAGC-AGcccguuugGCAGCg -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUGaUCa-------UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 148851 0.66 0.999994
Target:  5'- cUGGCUGUUGCcgccgcugccgcguGACGACg---GCGACg -3'
miRNA:   3'- uGCUGACAACG--------------CUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 112335 0.66 0.999992
Target:  5'- uGCGGCUGcgacGCGA-AAC-GGUGCGACg -3'
miRNA:   3'- -UGCUGACaa--CGCUgUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 116787 0.66 0.999992
Target:  5'- cCGGCgc-UGCGACGACguggAGgccGCGACg -3'
miRNA:   3'- uGCUGacaACGCUGUUGa---UCa--UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201129 0.66 0.999992
Target:  5'- cGCGACaUGU--CGACGACaGGUGCGGa -3'
miRNA:   3'- -UGCUG-ACAacGCUGUUGaUCAUGUUg -5'
30123 5' -46.9 NC_006273.1 + 232903 0.66 0.999989
Target:  5'- cGCGGCgc--GCGGguGCaGGUGCAGCg -3'
miRNA:   3'- -UGCUGacaaCGCUguUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 38010 0.66 0.999989
Target:  5'- cGCGGCgc--GCGGguGCaGGUGCAGCg -3'
miRNA:   3'- -UGCUGacaaCGCUguUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 7874 0.66 0.999989
Target:  5'- gUGACgUGgcGUGACGaaGCUGGUACggUg -3'
miRNA:   3'- uGCUG-ACaaCGCUGU--UGAUCAUGuuG- -5'
30123 5' -46.9 NC_006273.1 + 102909 0.66 0.999989
Target:  5'- cACGGCgaaucaGUUGCGACAAC-GGUccguuGCGAa -3'
miRNA:   3'- -UGCUGa-----CAACGCUGUUGaUCA-----UGUUg -5'
30123 5' -46.9 NC_006273.1 + 53907 0.66 0.999985
Target:  5'- gACGACgGUguugcuggaggucugGCGGCAGC-AGUACAc- -3'
miRNA:   3'- -UGCUGaCAa--------------CGCUGUUGaUCAUGUug -5'
30123 5' -46.9 NC_006273.1 + 144441 0.66 0.999984
Target:  5'- uGCGACUGcacgGCGGCGAggcGGUGCGc- -3'
miRNA:   3'- -UGCUGACaa--CGCUGUUga-UCAUGUug -5'
30123 5' -46.9 NC_006273.1 + 71804 0.66 0.999984
Target:  5'- cGCGGCgGUgGCGACAACggGGUuuACcACg -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUGa-UCA--UGuUG- -5'
30123 5' -46.9 NC_006273.1 + 70007 0.66 0.999984
Target:  5'- --aACUGUuuUGgGAaaauaAACUGGUGCAGCa -3'
miRNA:   3'- ugcUGACA--ACgCUg----UUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 51501 0.66 0.999984
Target:  5'- gGCGGCaacgGCGGCGACgAGgACAACu -3'
miRNA:   3'- -UGCUGacaaCGCUGUUGaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 130759 0.66 0.999984
Target:  5'- cGCGGCU-UUGCGACGGCacaucaGCAGCu -3'
miRNA:   3'- -UGCUGAcAACGCUGUUGauca--UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 176569 0.66 0.999984
Target:  5'- uUGGCgagUGUGACAuGCcGGUGCAGCg -3'
miRNA:   3'- uGCUGacaACGCUGU-UGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 149684 0.66 0.999978
Target:  5'- gUGGCUGUUGCugcgcgccgguGGCGACUGGcucuCGGCc -3'
miRNA:   3'- uGCUGACAACG-----------CUGUUGAUCau--GUUG- -5'
30123 5' -46.9 NC_006273.1 + 148642 0.66 0.999978
Target:  5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3'
miRNA:   3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 70119 0.66 0.999978
Target:  5'- gAUGACgGUgaUGCGcggcuACAGCgAGUGCGGCg -3'
miRNA:   3'- -UGCUGaCA--ACGC-----UGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 162997 0.67 0.999971
Target:  5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3'
miRNA:   3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.