miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 162997 0.67 0.999971
Target:  5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3'
miRNA:   3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5'
30123 5' -46.9 NC_006273.1 + 1215 0.67 0.999947
Target:  5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3'
miRNA:   3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 47268 0.67 0.999947
Target:  5'- cACG-CUGgUGCGugGGCUGGaacuugcgcgGCAACa -3'
miRNA:   3'- -UGCuGACaACGCugUUGAUCa---------UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 100405 0.67 0.99993
Target:  5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3'
miRNA:   3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 78608 0.67 0.99993
Target:  5'- gACGGCaaugUGCGGCAGgUuagauugacGGUACAACg -3'
miRNA:   3'- -UGCUGaca-ACGCUGUUgA---------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132385 0.67 0.999947
Target:  5'- uACGGCUGc-GCGACGGCgucuccggucUGGcGCGACa -3'
miRNA:   3'- -UGCUGACaaCGCUGUUG----------AUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 69350 0.67 0.99993
Target:  5'- -aGaACUGgagGaCGACGACgAGUACGACg -3'
miRNA:   3'- ugC-UGACaa-C-GCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 41153 0.67 0.999947
Target:  5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3'
miRNA:   3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 178661 0.68 0.999908
Target:  5'- gGCGGCgGUgGCGGCAAgaAGcACGACc -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUgaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201853 0.68 0.99984
Target:  5'- -aGACcuucUGCGACuuucucgAGCUGGUGCAGCg -3'
miRNA:   3'- ugCUGaca-ACGCUG-------UUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 82921 0.68 0.999844
Target:  5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3'
miRNA:   3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 20376 0.68 0.999908
Target:  5'- gACGACgGUcgcUGCGACGgucGCUGccACAGCa -3'
miRNA:   3'- -UGCUGaCA---ACGCUGU---UGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 101606 0.68 0.999744
Target:  5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3'
miRNA:   3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233524 0.68 0.999844
Target:  5'- cACGGCcGUaGCaGCGACgcggGGUGCGGCg -3'
miRNA:   3'- -UGCUGaCAaCGcUGUUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 75574 0.68 0.999908
Target:  5'- gGCGACUG-UGCGcGCcGCUGGccauCGACa -3'
miRNA:   3'- -UGCUGACaACGC-UGuUGAUCau--GUUG- -5'
30123 5' -46.9 NC_006273.1 + 87715 0.68 0.999908
Target:  5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3'
miRNA:   3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 68344 0.68 0.999908
Target:  5'- -aGACgcaGUUGCGACAACgcgacgaGCAGCu -3'
miRNA:   3'- ugCUGa--CAACGCUGUUGauca---UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132869 0.68 0.999744
Target:  5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3'
miRNA:   3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 115385 0.68 0.999719
Target:  5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3'
miRNA:   3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 111003 0.68 0.999917
Target:  5'- cGCGGCUGUcggcgcuuuucgucaUgcuGCGACAGCUGG-AUGACc -3'
miRNA:   3'- -UGCUGACA---------------A---CGCUGUUGAUCaUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.