Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 233518 | 0.72 | 0.992612 |
Target: 5'- cGCGAaagcCUGUUcGCGGCAGC--GUACGACg -3' miRNA: 3'- -UGCU----GACAA-CGCUGUUGauCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 201286 | 0.72 | 0.993605 |
Target: 5'- gGCGACgGgcGCGACGACggcGGUaaucACAACg -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGa--UCA----UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 91 | 0.73 | 0.983821 |
Target: 5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3' miRNA: 3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 234922 | 0.73 | 0.983821 |
Target: 5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3' miRNA: 3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 1720 | 0.73 | 0.98567 |
Target: 5'- cGCGGCg---GUGGCGACUGGgccgACAGCg -3' miRNA: 3'- -UGCUGacaaCGCUGUUGAUCa---UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 138101 | 0.73 | 0.987352 |
Target: 5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3' miRNA: 3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 40029 | 0.73 | 0.983821 |
Target: 5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3' miRNA: 3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 24373 | 0.75 | 0.958273 |
Target: 5'- gGCGGCUGUU-CGACAGCg---GCAACa -3' miRNA: 3'- -UGCUGACAAcGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 141597 | 0.75 | 0.968738 |
Target: 5'- aACGACagUGUcggUGUGGUAGCUAGUGCAGCc -3' miRNA: 3'- -UGCUG--ACA---ACGCUGUUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71879 | 0.76 | 0.940908 |
Target: 5'- uCGACUGcgGCGGCAACgGGcGCGACa -3' miRNA: 3'- uGCUGACaaCGCUGUUGaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71203 | 0.81 | 0.785284 |
Target: 5'- uGCGAUUGgaccUGCGACAACUGGcGCAAUc -3' miRNA: 3'- -UGCUGACa---ACGCUGUUGAUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 107069 | 1.11 | 0.026181 |
Target: 5'- aACGACUGUUGCGACAACUAGUACAACu -3' miRNA: 3'- -UGCUGACAACGCUGUUGAUCAUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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