miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 107069 1.11 0.026181
Target:  5'- aACGACUGUUGCGACAACUAGUACAACu -3'
miRNA:   3'- -UGCUGACAACGCUGUUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 71203 0.81 0.785284
Target:  5'- uGCGAUUGgaccUGCGACAACUGGcGCAAUc -3'
miRNA:   3'- -UGCUGACa---ACGCUGUUGAUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 71879 0.76 0.940908
Target:  5'- uCGACUGcgGCGGCAACgGGcGCGACa -3'
miRNA:   3'- uGCUGACaaCGCUGUUGaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 141597 0.75 0.968738
Target:  5'- aACGACagUGUcggUGUGGUAGCUAGUGCAGCc -3'
miRNA:   3'- -UGCUG--ACA---ACGCUGUUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 24373 0.75 0.958273
Target:  5'- gGCGGCUGUU-CGACAGCg---GCAACa -3'
miRNA:   3'- -UGCUGACAAcGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 40029 0.73 0.983821
Target:  5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3'
miRNA:   3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 138101 0.73 0.987352
Target:  5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 1720 0.73 0.98567
Target:  5'- cGCGGCg---GUGGCGACUGGgccgACAGCg -3'
miRNA:   3'- -UGCUGacaaCGCUGUUGAUCa---UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 234922 0.73 0.983821
Target:  5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3'
miRNA:   3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 91 0.73 0.983821
Target:  5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3'
miRNA:   3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201286 0.72 0.993605
Target:  5'- gGCGACgGgcGCGACGACggcGGUaaucACAACg -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGa--UCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233518 0.72 0.992612
Target:  5'- cGCGAaagcCUGUUcGCGGCAGC--GUACGACg -3'
miRNA:   3'- -UGCU----GACAA-CGCUGUUGauCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 23142 0.71 0.996565
Target:  5'- uAUGACUGUuuacgcUGCGAgAAC-GGUACGAUg -3'
miRNA:   3'- -UGCUGACA------ACGCUgUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 20205 0.71 0.997093
Target:  5'- cACGACgcgaGUGACAACgcAGUGCGGCg -3'
miRNA:   3'- -UGCUGacaaCGCUGUUGa-UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 114248 0.71 0.997093
Target:  5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3'
miRNA:   3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 122642 0.71 0.997552
Target:  5'- aGCuGCUGUUGCGACGGCgaaUGgGACg -3'
miRNA:   3'- -UGcUGACAACGCUGUUGaucAUgUUG- -5'
30123 5' -46.9 NC_006273.1 + 197059 0.7 0.998291
Target:  5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 2166 0.7 0.998291
Target:  5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 134940 0.7 0.998832
Target:  5'- gACGGCUGggGCGACcAU---UGCAGCa -3'
miRNA:   3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 154934 0.7 0.998291
Target:  5'- cACGACcgaggagaUGUUGCGugAGCUGGcGCGc- -3'
miRNA:   3'- -UGCUG--------ACAACGCugUUGAUCaUGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.