Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 71561 | 0.7 | 0.998832 |
Target: 5'- gGCGACU--UGCGACAACcGGaGCAGa -3' miRNA: 3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 154934 | 0.7 | 0.998291 |
Target: 5'- cACGACcgaggagaUGUUGCGugAGCUGGcGCGc- -3' miRNA: 3'- -UGCUG--------ACAACGCugUUGAUCaUGUug -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 197059 | 0.7 | 0.998291 |
Target: 5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 118106 | 0.69 | 0.999368 |
Target: 5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3' miRNA: 3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188608 | 0.69 | 0.999593 |
Target: 5'- gGCGugUGcUGCuauCAACU-GUACAACg -3' miRNA: 3'- -UGCugACaACGcu-GUUGAuCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188717 | 0.69 | 0.999593 |
Target: 5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3' miRNA: 3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 229448 | 0.69 | 0.999491 |
Target: 5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3' miRNA: 3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 144667 | 0.69 | 0.999368 |
Target: 5'- gGCGGC-GUUGCGGCAGUUuGUGCAcgACa -3' miRNA: 3'- -UGCUGaCAACGCUGUUGAuCAUGU--UG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 214981 | 0.69 | 0.999368 |
Target: 5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3' miRNA: 3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 67079 | 0.69 | 0.999219 |
Target: 5'- uGCGACUGgcGCG-CGACgAGUcgccGCGACc -3' miRNA: 3'- -UGCUGACaaCGCuGUUGaUCA----UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 117080 | 0.69 | 0.999676 |
Target: 5'- aGCGACUGcccaagcUGCGcuacgacaaGCAACUAGU-CGGCg -3' miRNA: 3'- -UGCUGACa------ACGC---------UGUUGAUCAuGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 115385 | 0.68 | 0.999719 |
Target: 5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3' miRNA: 3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 56967 | 0.68 | 0.999744 |
Target: 5'- -aGACcGUUGCGGCuGGCcacGUACAACa -3' miRNA: 3'- ugCUGaCAACGCUG-UUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 101606 | 0.68 | 0.999744 |
Target: 5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3' miRNA: 3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 201853 | 0.68 | 0.99984 |
Target: 5'- -aGACcuucUGCGACuuucucgAGCUGGUGCAGCg -3' miRNA: 3'- ugCUGaca-ACGCUG-------UUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 132869 | 0.68 | 0.999744 |
Target: 5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3' miRNA: 3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 68344 | 0.68 | 0.999908 |
Target: 5'- -aGACgcaGUUGCGACAACgcgacgaGCAGCu -3' miRNA: 3'- ugCUGa--CAACGCUGUUGauca---UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 87715 | 0.68 | 0.999908 |
Target: 5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3' miRNA: 3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 75574 | 0.68 | 0.999908 |
Target: 5'- gGCGACUG-UGCGcGCcGCUGGccauCGACa -3' miRNA: 3'- -UGCUGACaACGC-UGuUGAUCau--GUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 233524 | 0.68 | 0.999844 |
Target: 5'- cACGGCcGUaGCaGCGACgcggGGUGCGGCg -3' miRNA: 3'- -UGCUGaCAaCGcUGUUGa---UCAUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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