Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 82921 | 0.68 | 0.999844 |
Target: 5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3' miRNA: 3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 101606 | 0.68 | 0.999744 |
Target: 5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3' miRNA: 3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 56967 | 0.68 | 0.999744 |
Target: 5'- -aGACcGUUGCGGCuGGCcacGUACAACa -3' miRNA: 3'- ugCUGaCAACGCUG-UUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 115385 | 0.68 | 0.999719 |
Target: 5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3' miRNA: 3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 100405 | 0.67 | 0.99993 |
Target: 5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3' miRNA: 3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 69350 | 0.67 | 0.99993 |
Target: 5'- -aGaACUGgagGaCGACGACgAGUACGACg -3' miRNA: 3'- ugC-UGACaa-C-GCUGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 132385 | 0.67 | 0.999947 |
Target: 5'- uACGGCUGc-GCGACGGCgucuccggucUGGcGCGACa -3' miRNA: 3'- -UGCUGACaaCGCUGUUG----------AUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 41153 | 0.67 | 0.999947 |
Target: 5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3' miRNA: 3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 78608 | 0.67 | 0.99993 |
Target: 5'- gACGGCaaugUGCGGCAGgUuagauugacGGUACAACg -3' miRNA: 3'- -UGCUGaca-ACGCUGUUgA---------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 47268 | 0.67 | 0.999947 |
Target: 5'- cACG-CUGgUGCGugGGCUGGaacuugcgcgGCAACa -3' miRNA: 3'- -UGCuGACaACGCugUUGAUCa---------UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 87613 | 0.67 | 0.999947 |
Target: 5'- cGCcGCUGUUGCGGCGguaGCUGaUACggUg -3' miRNA: 3'- -UGcUGACAACGCUGU---UGAUcAUGuuG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 1215 | 0.67 | 0.999947 |
Target: 5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3' miRNA: 3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 162997 | 0.67 | 0.999971 |
Target: 5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3' miRNA: 3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 201129 | 0.66 | 0.999992 |
Target: 5'- cGCGACaUGU--CGACGACaGGUGCGGa -3' miRNA: 3'- -UGCUG-ACAacGCUGUUGaUCAUGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 148851 | 0.66 | 0.999994 |
Target: 5'- cUGGCUGUUGCcgccgcugccgcguGACGACg---GCGACg -3' miRNA: 3'- uGCUGACAACG--------------CUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 232903 | 0.66 | 0.999989 |
Target: 5'- cGCGGCgc--GCGGguGCaGGUGCAGCg -3' miRNA: 3'- -UGCUGacaaCGCUguUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 53907 | 0.66 | 0.999985 |
Target: 5'- gACGACgGUguugcuggaggucugGCGGCAGC-AGUACAc- -3' miRNA: 3'- -UGCUGaCAa--------------CGCUGUUGaUCAUGUug -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 70007 | 0.66 | 0.999984 |
Target: 5'- --aACUGUuuUGgGAaaauaAACUGGUGCAGCa -3' miRNA: 3'- ugcUGACA--ACgCUg----UUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 56915 | 0.66 | 0.999994 |
Target: 5'- gACGACaGUgGCGGCAGC-AGcccguuugGCAGCg -3' miRNA: 3'- -UGCUGaCAaCGCUGUUGaUCa-------UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 149684 | 0.66 | 0.999978 |
Target: 5'- gUGGCUGUUGCugcgcgccgguGGCGACUGGcucuCGGCc -3' miRNA: 3'- uGCUGACAACG-----------CUGUUGAUCau--GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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