miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 71561 0.7 0.998832
Target:  5'- gGCGACU--UGCGACAACcGGaGCAGa -3'
miRNA:   3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5'
30123 5' -46.9 NC_006273.1 + 197058 0.7 0.998832
Target:  5'- gACGACgGUggcgGCGACGACacg-GCGACg -3'
miRNA:   3'- -UGCUGaCAa---CGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 134940 0.7 0.998832
Target:  5'- gACGGCUGggGCGACcAU---UGCAGCa -3'
miRNA:   3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 67079 0.69 0.999219
Target:  5'- uGCGACUGgcGCG-CGACgAGUcgccGCGACc -3'
miRNA:   3'- -UGCUGACaaCGCuGUUGaUCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 144667 0.69 0.999368
Target:  5'- gGCGGC-GUUGCGGCAGUUuGUGCAcgACa -3'
miRNA:   3'- -UGCUGaCAACGCUGUUGAuCAUGU--UG- -5'
30123 5' -46.9 NC_006273.1 + 118106 0.69 0.999368
Target:  5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3'
miRNA:   3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 214981 0.69 0.999368
Target:  5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3'
miRNA:   3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 229448 0.69 0.999491
Target:  5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5'
30123 5' -46.9 NC_006273.1 + 188717 0.69 0.999593
Target:  5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3'
miRNA:   3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5'
30123 5' -46.9 NC_006273.1 + 188608 0.69 0.999593
Target:  5'- gGCGugUGcUGCuauCAACU-GUACAACg -3'
miRNA:   3'- -UGCugACaACGcu-GUUGAuCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 117080 0.69 0.999676
Target:  5'- aGCGACUGcccaagcUGCGcuacgacaaGCAACUAGU-CGGCg -3'
miRNA:   3'- -UGCUGACa------ACGC---------UGUUGAUCAuGUUG- -5'
30123 5' -46.9 NC_006273.1 + 115385 0.68 0.999719
Target:  5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3'
miRNA:   3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132869 0.68 0.999744
Target:  5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3'
miRNA:   3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 56967 0.68 0.999744
Target:  5'- -aGACcGUUGCGGCuGGCcacGUACAACa -3'
miRNA:   3'- ugCUGaCAACGCUG-UUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 101606 0.68 0.999744
Target:  5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3'
miRNA:   3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201853 0.68 0.99984
Target:  5'- -aGACcuucUGCGACuuucucgAGCUGGUGCAGCg -3'
miRNA:   3'- ugCUGaca-ACGCUG-------UUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233524 0.68 0.999844
Target:  5'- cACGGCcGUaGCaGCGACgcggGGUGCGGCg -3'
miRNA:   3'- -UGCUGaCAaCGcUGUUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 82921 0.68 0.999844
Target:  5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3'
miRNA:   3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 87715 0.68 0.999908
Target:  5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3'
miRNA:   3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 68344 0.68 0.999908
Target:  5'- -aGACgcaGUUGCGACAACgcgacgaGCAGCu -3'
miRNA:   3'- ugCUGa--CAACGCUGUUGauca---UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.