Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 75574 | 0.68 | 0.999908 |
Target: 5'- gGCGACUG-UGCGcGCcGCUGGccauCGACa -3' miRNA: 3'- -UGCUGACaACGC-UGuUGAUCau--GUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 20376 | 0.68 | 0.999908 |
Target: 5'- gACGACgGUcgcUGCGACGgucGCUGccACAGCa -3' miRNA: 3'- -UGCUGaCA---ACGCUGU---UGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 178661 | 0.68 | 0.999908 |
Target: 5'- gGCGGCgGUgGCGGCAAgaAGcACGACc -3' miRNA: 3'- -UGCUGaCAaCGCUGUUgaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 111003 | 0.68 | 0.999917 |
Target: 5'- cGCGGCUGUcggcgcuuuucgucaUgcuGCGACAGCUGG-AUGACc -3' miRNA: 3'- -UGCUGACA---------------A---CGCUGUUGAUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 100405 | 0.67 | 0.99993 |
Target: 5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3' miRNA: 3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 69350 | 0.67 | 0.99993 |
Target: 5'- -aGaACUGgagGaCGACGACgAGUACGACg -3' miRNA: 3'- ugC-UGACaa-C-GCUGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 78608 | 0.67 | 0.99993 |
Target: 5'- gACGGCaaugUGCGGCAGgUuagauugacGGUACAACg -3' miRNA: 3'- -UGCUGaca-ACGCUGUUgA---------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 132385 | 0.67 | 0.999947 |
Target: 5'- uACGGCUGc-GCGACGGCgucuccggucUGGcGCGACa -3' miRNA: 3'- -UGCUGACaaCGCUGUUG----------AUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 41153 | 0.67 | 0.999947 |
Target: 5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3' miRNA: 3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 47268 | 0.67 | 0.999947 |
Target: 5'- cACG-CUGgUGCGugGGCUGGaacuugcgcgGCAACa -3' miRNA: 3'- -UGCuGACaACGCugUUGAUCa---------UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 87613 | 0.67 | 0.999947 |
Target: 5'- cGCcGCUGUUGCGGCGguaGCUGaUACggUg -3' miRNA: 3'- -UGcUGACAACGCUGU---UGAUcAUGuuG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 1215 | 0.67 | 0.999947 |
Target: 5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3' miRNA: 3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 162997 | 0.67 | 0.999971 |
Target: 5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3' miRNA: 3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 148642 | 0.66 | 0.999978 |
Target: 5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3' miRNA: 3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 149684 | 0.66 | 0.999978 |
Target: 5'- gUGGCUGUUGCugcgcgccgguGGCGACUGGcucuCGGCc -3' miRNA: 3'- uGCUGACAACG-----------CUGUUGAUCau--GUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 70119 | 0.66 | 0.999978 |
Target: 5'- gAUGACgGUgaUGCGcggcuACAGCgAGUGCGGCg -3' miRNA: 3'- -UGCUGaCA--ACGC-----UGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 144441 | 0.66 | 0.999984 |
Target: 5'- uGCGACUGcacgGCGGCGAggcGGUGCGc- -3' miRNA: 3'- -UGCUGACaa--CGCUGUUga-UCAUGUug -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 70007 | 0.66 | 0.999984 |
Target: 5'- --aACUGUuuUGgGAaaauaAACUGGUGCAGCa -3' miRNA: 3'- ugcUGACA--ACgCUg----UUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 51501 | 0.66 | 0.999984 |
Target: 5'- gGCGGCaacgGCGGCGACgAGgACAACu -3' miRNA: 3'- -UGCUGacaaCGCUGUUGaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 130759 | 0.66 | 0.999984 |
Target: 5'- cGCGGCU-UUGCGACGGCacaucaGCAGCu -3' miRNA: 3'- -UGCUGAcAACGCUGUUGauca--UGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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