Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 115385 | 0.68 | 0.999719 |
Target: 5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3' miRNA: 3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 117080 | 0.69 | 0.999676 |
Target: 5'- aGCGACUGcccaagcUGCGcuacgacaaGCAACUAGU-CGGCg -3' miRNA: 3'- -UGCUGACa------ACGC---------UGUUGAUCAuGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188717 | 0.69 | 0.999593 |
Target: 5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3' miRNA: 3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188608 | 0.69 | 0.999593 |
Target: 5'- gGCGugUGcUGCuauCAACU-GUACAACg -3' miRNA: 3'- -UGCugACaACGcu-GUUGAuCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 229448 | 0.69 | 0.999491 |
Target: 5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3' miRNA: 3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 214981 | 0.69 | 0.999368 |
Target: 5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3' miRNA: 3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 144667 | 0.69 | 0.999368 |
Target: 5'- gGCGGC-GUUGCGGCAGUUuGUGCAcgACa -3' miRNA: 3'- -UGCUGaCAACGCUGUUGAuCAUGU--UG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 118106 | 0.69 | 0.999368 |
Target: 5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3' miRNA: 3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 67079 | 0.69 | 0.999219 |
Target: 5'- uGCGACUGgcGCG-CGACgAGUcgccGCGACc -3' miRNA: 3'- -UGCUGACaaCGCuGUUGaUCA----UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 189702 | 0.7 | 0.998832 |
Target: 5'- cGCGcccACaUG-UGCGGCGuCUGGUGCAACa -3' miRNA: 3'- -UGC---UG-ACaACGCUGUuGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71561 | 0.7 | 0.998832 |
Target: 5'- gGCGACU--UGCGACAACcGGaGCAGa -3' miRNA: 3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 134940 | 0.7 | 0.998832 |
Target: 5'- gACGGCUGggGCGACcAU---UGCAGCa -3' miRNA: 3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 197058 | 0.7 | 0.998832 |
Target: 5'- gACGACgGUggcgGCGACGACacg-GCGACg -3' miRNA: 3'- -UGCUGaCAa---CGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 2166 | 0.7 | 0.998291 |
Target: 5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 197059 | 0.7 | 0.998291 |
Target: 5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 154934 | 0.7 | 0.998291 |
Target: 5'- cACGACcgaggagaUGUUGCGugAGCUGGcGCGc- -3' miRNA: 3'- -UGCUG--------ACAACGCugUUGAUCaUGUug -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 122642 | 0.71 | 0.997552 |
Target: 5'- aGCuGCUGUUGCGACGGCgaaUGgGACg -3' miRNA: 3'- -UGcUGACAACGCUGUUGaucAUgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 114248 | 0.71 | 0.997093 |
Target: 5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3' miRNA: 3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 20205 | 0.71 | 0.997093 |
Target: 5'- cACGACgcgaGUGACAACgcAGUGCGGCg -3' miRNA: 3'- -UGCUGacaaCGCUGUUGa-UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 23142 | 0.71 | 0.996565 |
Target: 5'- uAUGACUGUuuacgcUGCGAgAAC-GGUACGAUg -3' miRNA: 3'- -UGCUGACA------ACGCUgUUGaUCAUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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