Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 70007 | 0.66 | 0.999984 |
Target: 5'- --aACUGUuuUGgGAaaauaAACUGGUGCAGCa -3' miRNA: 3'- ugcUGACA--ACgCUg----UUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 70119 | 0.66 | 0.999978 |
Target: 5'- gAUGACgGUgaUGCGcggcuACAGCgAGUGCGGCg -3' miRNA: 3'- -UGCUGaCA--ACGC-----UGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71203 | 0.81 | 0.785284 |
Target: 5'- uGCGAUUGgaccUGCGACAACUGGcGCAAUc -3' miRNA: 3'- -UGCUGACa---ACGCUGUUGAUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71561 | 0.7 | 0.998832 |
Target: 5'- gGCGACU--UGCGACAACcGGaGCAGa -3' miRNA: 3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71804 | 0.66 | 0.999984 |
Target: 5'- cGCGGCgGUgGCGACAACggGGUuuACcACg -3' miRNA: 3'- -UGCUGaCAaCGCUGUUGa-UCA--UGuUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71879 | 0.76 | 0.940908 |
Target: 5'- uCGACUGcgGCGGCAACgGGcGCGACa -3' miRNA: 3'- uGCUGACaaCGCUGUUGaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 75574 | 0.68 | 0.999908 |
Target: 5'- gGCGACUG-UGCGcGCcGCUGGccauCGACa -3' miRNA: 3'- -UGCUGACaACGC-UGuUGAUCau--GUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 78608 | 0.67 | 0.99993 |
Target: 5'- gACGGCaaugUGCGGCAGgUuagauugacGGUACAACg -3' miRNA: 3'- -UGCUGaca-ACGCUGUUgA---------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 82921 | 0.68 | 0.999844 |
Target: 5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3' miRNA: 3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 87613 | 0.67 | 0.999947 |
Target: 5'- cGCcGCUGUUGCGGCGguaGCUGaUACggUg -3' miRNA: 3'- -UGcUGACAACGCUGU---UGAUcAUGuuG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 87715 | 0.68 | 0.999908 |
Target: 5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3' miRNA: 3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 100405 | 0.67 | 0.99993 |
Target: 5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3' miRNA: 3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 101606 | 0.68 | 0.999744 |
Target: 5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3' miRNA: 3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 102909 | 0.66 | 0.999989 |
Target: 5'- cACGGCgaaucaGUUGCGACAAC-GGUccguuGCGAa -3' miRNA: 3'- -UGCUGa-----CAACGCUGUUGaUCA-----UGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 107069 | 1.11 | 0.026181 |
Target: 5'- aACGACUGUUGCGACAACUAGUACAACu -3' miRNA: 3'- -UGCUGACAACGCUGUUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 111003 | 0.68 | 0.999917 |
Target: 5'- cGCGGCUGUcggcgcuuuucgucaUgcuGCGACAGCUGG-AUGACc -3' miRNA: 3'- -UGCUGACA---------------A---CGCUGUUGAUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 112335 | 0.66 | 0.999992 |
Target: 5'- uGCGGCUGcgacGCGA-AAC-GGUGCGACg -3' miRNA: 3'- -UGCUGACaa--CGCUgUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 114248 | 0.71 | 0.997093 |
Target: 5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3' miRNA: 3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 115385 | 0.68 | 0.999719 |
Target: 5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3' miRNA: 3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 116787 | 0.66 | 0.999992 |
Target: 5'- cCGGCgc-UGCGACGACguggAGgccGCGACg -3' miRNA: 3'- uGCUGacaACGCUGUUGa---UCa--UGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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