Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 117080 | 0.69 | 0.999676 |
Target: 5'- aGCGACUGcccaagcUGCGcuacgacaaGCAACUAGU-CGGCg -3' miRNA: 3'- -UGCUGACa------ACGC---------UGUUGAUCAuGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 118106 | 0.69 | 0.999368 |
Target: 5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3' miRNA: 3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 122642 | 0.71 | 0.997552 |
Target: 5'- aGCuGCUGUUGCGACGGCgaaUGgGACg -3' miRNA: 3'- -UGcUGACAACGCUGUUGaucAUgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 130759 | 0.66 | 0.999984 |
Target: 5'- cGCGGCU-UUGCGACGGCacaucaGCAGCu -3' miRNA: 3'- -UGCUGAcAACGCUGUUGauca--UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 132385 | 0.67 | 0.999947 |
Target: 5'- uACGGCUGc-GCGACGGCgucuccggucUGGcGCGACa -3' miRNA: 3'- -UGCUGACaaCGCUGUUG----------AUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 132869 | 0.68 | 0.999744 |
Target: 5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3' miRNA: 3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 134940 | 0.7 | 0.998832 |
Target: 5'- gACGGCUGggGCGACcAU---UGCAGCa -3' miRNA: 3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 138101 | 0.73 | 0.987352 |
Target: 5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3' miRNA: 3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 141597 | 0.75 | 0.968738 |
Target: 5'- aACGACagUGUcggUGUGGUAGCUAGUGCAGCc -3' miRNA: 3'- -UGCUG--ACA---ACGCUGUUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 144441 | 0.66 | 0.999984 |
Target: 5'- uGCGACUGcacgGCGGCGAggcGGUGCGc- -3' miRNA: 3'- -UGCUGACaa--CGCUGUUga-UCAUGUug -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 144667 | 0.69 | 0.999368 |
Target: 5'- gGCGGC-GUUGCGGCAGUUuGUGCAcgACa -3' miRNA: 3'- -UGCUGaCAACGCUGUUGAuCAUGU--UG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 148642 | 0.66 | 0.999978 |
Target: 5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3' miRNA: 3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 148851 | 0.66 | 0.999994 |
Target: 5'- cUGGCUGUUGCcgccgcugccgcguGACGACg---GCGACg -3' miRNA: 3'- uGCUGACAACG--------------CUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 149684 | 0.66 | 0.999978 |
Target: 5'- gUGGCUGUUGCugcgcgccgguGGCGACUGGcucuCGGCc -3' miRNA: 3'- uGCUGACAACG-----------CUGUUGAUCau--GUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 154934 | 0.7 | 0.998291 |
Target: 5'- cACGACcgaggagaUGUUGCGugAGCUGGcGCGc- -3' miRNA: 3'- -UGCUG--------ACAACGCugUUGAUCaUGUug -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 162997 | 0.67 | 0.999971 |
Target: 5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3' miRNA: 3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 176569 | 0.66 | 0.999984 |
Target: 5'- uUGGCgagUGUGACAuGCcGGUGCAGCg -3' miRNA: 3'- uGCUGacaACGCUGU-UGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 178661 | 0.68 | 0.999908 |
Target: 5'- gGCGGCgGUgGCGGCAAgaAGcACGACc -3' miRNA: 3'- -UGCUGaCAaCGCUGUUgaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188608 | 0.69 | 0.999593 |
Target: 5'- gGCGugUGcUGCuauCAACU-GUACAACg -3' miRNA: 3'- -UGCugACaACGcu-GUUGAuCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188717 | 0.69 | 0.999593 |
Target: 5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3' miRNA: 3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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