miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 234922 0.73 0.983821
Target:  5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3'
miRNA:   3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233524 0.68 0.999844
Target:  5'- cACGGCcGUaGCaGCGACgcggGGUGCGGCg -3'
miRNA:   3'- -UGCUGaCAaCGcUGUUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233518 0.72 0.992612
Target:  5'- cGCGAaagcCUGUUcGCGGCAGC--GUACGACg -3'
miRNA:   3'- -UGCU----GACAA-CGCUGUUGauCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 232903 0.66 0.999989
Target:  5'- cGCGGCgc--GCGGguGCaGGUGCAGCg -3'
miRNA:   3'- -UGCUGacaaCGCUguUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 229448 0.69 0.999491
Target:  5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5'
30123 5' -46.9 NC_006273.1 + 214981 0.69 0.999368
Target:  5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3'
miRNA:   3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201853 0.68 0.99984
Target:  5'- -aGACcuucUGCGACuuucucgAGCUGGUGCAGCg -3'
miRNA:   3'- ugCUGaca-ACGCUG-------UUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201286 0.72 0.993605
Target:  5'- gGCGACgGgcGCGACGACggcGGUaaucACAACg -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGa--UCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201129 0.66 0.999992
Target:  5'- cGCGACaUGU--CGACGACaGGUGCGGa -3'
miRNA:   3'- -UGCUG-ACAacGCUGUUGaUCAUGUUg -5'
30123 5' -46.9 NC_006273.1 + 197059 0.7 0.998291
Target:  5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 197058 0.7 0.998832
Target:  5'- gACGACgGUggcgGCGACGACacg-GCGACg -3'
miRNA:   3'- -UGCUGaCAa---CGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 189702 0.7 0.998832
Target:  5'- cGCGcccACaUG-UGCGGCGuCUGGUGCAACa -3'
miRNA:   3'- -UGC---UG-ACaACGCUGUuGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 188717 0.69 0.999593
Target:  5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3'
miRNA:   3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5'
30123 5' -46.9 NC_006273.1 + 188608 0.69 0.999593
Target:  5'- gGCGugUGcUGCuauCAACU-GUACAACg -3'
miRNA:   3'- -UGCugACaACGcu-GUUGAuCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 178661 0.68 0.999908
Target:  5'- gGCGGCgGUgGCGGCAAgaAGcACGACc -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUgaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 176569 0.66 0.999984
Target:  5'- uUGGCgagUGUGACAuGCcGGUGCAGCg -3'
miRNA:   3'- uGCUGacaACGCUGU-UGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 162997 0.67 0.999971
Target:  5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3'
miRNA:   3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5'
30123 5' -46.9 NC_006273.1 + 154934 0.7 0.998291
Target:  5'- cACGACcgaggagaUGUUGCGugAGCUGGcGCGc- -3'
miRNA:   3'- -UGCUG--------ACAACGCugUUGAUCaUGUug -5'
30123 5' -46.9 NC_006273.1 + 149684 0.66 0.999978
Target:  5'- gUGGCUGUUGCugcgcgccgguGGCGACUGGcucuCGGCc -3'
miRNA:   3'- uGCUGACAACG-----------CUGUUGAUCau--GUUG- -5'
30123 5' -46.9 NC_006273.1 + 148851 0.66 0.999994
Target:  5'- cUGGCUGUUGCcgccgcugccgcguGACGACg---GCGACg -3'
miRNA:   3'- uGCUGACAACG--------------CUGUUGaucaUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.