miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 148642 0.66 0.999978
Target:  5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3'
miRNA:   3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 144667 0.69 0.999368
Target:  5'- gGCGGC-GUUGCGGCAGUUuGUGCAcgACa -3'
miRNA:   3'- -UGCUGaCAACGCUGUUGAuCAUGU--UG- -5'
30123 5' -46.9 NC_006273.1 + 144441 0.66 0.999984
Target:  5'- uGCGACUGcacgGCGGCGAggcGGUGCGc- -3'
miRNA:   3'- -UGCUGACaa--CGCUGUUga-UCAUGUug -5'
30123 5' -46.9 NC_006273.1 + 141597 0.75 0.968738
Target:  5'- aACGACagUGUcggUGUGGUAGCUAGUGCAGCc -3'
miRNA:   3'- -UGCUG--ACA---ACGCUGUUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 138101 0.73 0.987352
Target:  5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 134940 0.7 0.998832
Target:  5'- gACGGCUGggGCGACcAU---UGCAGCa -3'
miRNA:   3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132869 0.68 0.999744
Target:  5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3'
miRNA:   3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132385 0.67 0.999947
Target:  5'- uACGGCUGc-GCGACGGCgucuccggucUGGcGCGACa -3'
miRNA:   3'- -UGCUGACaaCGCUGUUG----------AUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 130759 0.66 0.999984
Target:  5'- cGCGGCU-UUGCGACGGCacaucaGCAGCu -3'
miRNA:   3'- -UGCUGAcAACGCUGUUGauca--UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 122642 0.71 0.997552
Target:  5'- aGCuGCUGUUGCGACGGCgaaUGgGACg -3'
miRNA:   3'- -UGcUGACAACGCUGUUGaucAUgUUG- -5'
30123 5' -46.9 NC_006273.1 + 118106 0.69 0.999368
Target:  5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3'
miRNA:   3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 117080 0.69 0.999676
Target:  5'- aGCGACUGcccaagcUGCGcuacgacaaGCAACUAGU-CGGCg -3'
miRNA:   3'- -UGCUGACa------ACGC---------UGUUGAUCAuGUUG- -5'
30123 5' -46.9 NC_006273.1 + 116787 0.66 0.999992
Target:  5'- cCGGCgc-UGCGACGACguggAGgccGCGACg -3'
miRNA:   3'- uGCUGacaACGCUGUUGa---UCa--UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 115385 0.68 0.999719
Target:  5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3'
miRNA:   3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 114248 0.71 0.997093
Target:  5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3'
miRNA:   3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 112335 0.66 0.999992
Target:  5'- uGCGGCUGcgacGCGA-AAC-GGUGCGACg -3'
miRNA:   3'- -UGCUGACaa--CGCUgUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 111003 0.68 0.999917
Target:  5'- cGCGGCUGUcggcgcuuuucgucaUgcuGCGACAGCUGG-AUGACc -3'
miRNA:   3'- -UGCUGACA---------------A---CGCUGUUGAUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 107069 1.11 0.026181
Target:  5'- aACGACUGUUGCGACAACUAGUACAACu -3'
miRNA:   3'- -UGCUGACAACGCUGUUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 102909 0.66 0.999989
Target:  5'- cACGGCgaaucaGUUGCGACAAC-GGUccguuGCGAa -3'
miRNA:   3'- -UGCUGa-----CAACGCUGUUGaUCA-----UGUUg -5'
30123 5' -46.9 NC_006273.1 + 101606 0.68 0.999744
Target:  5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3'
miRNA:   3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.