miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 100405 0.67 0.99993
Target:  5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3'
miRNA:   3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 87715 0.68 0.999908
Target:  5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3'
miRNA:   3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 87613 0.67 0.999947
Target:  5'- cGCcGCUGUUGCGGCGguaGCUGaUACggUg -3'
miRNA:   3'- -UGcUGACAACGCUGU---UGAUcAUGuuG- -5'
30123 5' -46.9 NC_006273.1 + 82921 0.68 0.999844
Target:  5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3'
miRNA:   3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 78608 0.67 0.99993
Target:  5'- gACGGCaaugUGCGGCAGgUuagauugacGGUACAACg -3'
miRNA:   3'- -UGCUGaca-ACGCUGUUgA---------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 75574 0.68 0.999908
Target:  5'- gGCGACUG-UGCGcGCcGCUGGccauCGACa -3'
miRNA:   3'- -UGCUGACaACGC-UGuUGAUCau--GUUG- -5'
30123 5' -46.9 NC_006273.1 + 71879 0.76 0.940908
Target:  5'- uCGACUGcgGCGGCAACgGGcGCGACa -3'
miRNA:   3'- uGCUGACaaCGCUGUUGaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 71804 0.66 0.999984
Target:  5'- cGCGGCgGUgGCGACAACggGGUuuACcACg -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUGa-UCA--UGuUG- -5'
30123 5' -46.9 NC_006273.1 + 71561 0.7 0.998832
Target:  5'- gGCGACU--UGCGACAACcGGaGCAGa -3'
miRNA:   3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5'
30123 5' -46.9 NC_006273.1 + 71203 0.81 0.785284
Target:  5'- uGCGAUUGgaccUGCGACAACUGGcGCAAUc -3'
miRNA:   3'- -UGCUGACa---ACGCUGUUGAUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 70119 0.66 0.999978
Target:  5'- gAUGACgGUgaUGCGcggcuACAGCgAGUGCGGCg -3'
miRNA:   3'- -UGCUGaCA--ACGC-----UGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 70007 0.66 0.999984
Target:  5'- --aACUGUuuUGgGAaaauaAACUGGUGCAGCa -3'
miRNA:   3'- ugcUGACA--ACgCUg----UUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 69350 0.67 0.99993
Target:  5'- -aGaACUGgagGaCGACGACgAGUACGACg -3'
miRNA:   3'- ugC-UGACaa-C-GCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 68344 0.68 0.999908
Target:  5'- -aGACgcaGUUGCGACAACgcgacgaGCAGCu -3'
miRNA:   3'- ugCUGa--CAACGCUGUUGauca---UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 67079 0.69 0.999219
Target:  5'- uGCGACUGgcGCG-CGACgAGUcgccGCGACc -3'
miRNA:   3'- -UGCUGACaaCGCuGUUGaUCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 56967 0.68 0.999744
Target:  5'- -aGACcGUUGCGGCuGGCcacGUACAACa -3'
miRNA:   3'- ugCUGaCAACGCUG-UUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 56915 0.66 0.999994
Target:  5'- gACGACaGUgGCGGCAGC-AGcccguuugGCAGCg -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUGaUCa-------UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 53907 0.66 0.999985
Target:  5'- gACGACgGUguugcuggaggucugGCGGCAGC-AGUACAc- -3'
miRNA:   3'- -UGCUGaCAa--------------CGCUGUUGaUCAUGUug -5'
30123 5' -46.9 NC_006273.1 + 51501 0.66 0.999984
Target:  5'- gGCGGCaacgGCGGCGACgAGgACAACu -3'
miRNA:   3'- -UGCUGacaaCGCUGUUGaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 47268 0.67 0.999947
Target:  5'- cACG-CUGgUGCGugGGCUGGaacuugcgcgGCAACa -3'
miRNA:   3'- -UGCuGACaACGCugUUGAUCa---------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.