miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 82921 0.68 0.999844
Target:  5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3'
miRNA:   3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 20376 0.68 0.999908
Target:  5'- gACGACgGUcgcUGCGACGgucGCUGccACAGCa -3'
miRNA:   3'- -UGCUGaCA---ACGCUGU---UGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 178661 0.68 0.999908
Target:  5'- gGCGGCgGUgGCGGCAAgaAGcACGACc -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUgaUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 111003 0.68 0.999917
Target:  5'- cGCGGCUGUcggcgcuuuucgucaUgcuGCGACAGCUGG-AUGACc -3'
miRNA:   3'- -UGCUGACA---------------A---CGCUGUUGAUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 100405 0.67 0.99993
Target:  5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3'
miRNA:   3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 69350 0.67 0.99993
Target:  5'- -aGaACUGgagGaCGACGACgAGUACGACg -3'
miRNA:   3'- ugC-UGACaa-C-GCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132385 0.67 0.999947
Target:  5'- uACGGCUGc-GCGACGGCgucuccggucUGGcGCGACa -3'
miRNA:   3'- -UGCUGACaaCGCUGUUG----------AUCaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 41153 0.67 0.999947
Target:  5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3'
miRNA:   3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 144667 0.69 0.999368
Target:  5'- gGCGGC-GUUGCGGCAGUUuGUGCAcgACa -3'
miRNA:   3'- -UGCUGaCAACGCUGUUGAuCAUGU--UG- -5'
30123 5' -46.9 NC_006273.1 + 118106 0.69 0.999368
Target:  5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3'
miRNA:   3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 189702 0.7 0.998832
Target:  5'- cGCGcccACaUG-UGCGGCGuCUGGUGCAACa -3'
miRNA:   3'- -UGC---UG-ACaACGCUGUuGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 24373 0.75 0.958273
Target:  5'- gGCGGCUGUU-CGACAGCg---GCAACa -3'
miRNA:   3'- -UGCUGACAAcGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 40029 0.73 0.983821
Target:  5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3'
miRNA:   3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233518 0.72 0.992612
Target:  5'- cGCGAaagcCUGUUcGCGGCAGC--GUACGACg -3'
miRNA:   3'- -UGCU----GACAA-CGCUGUUGauCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201286 0.72 0.993605
Target:  5'- gGCGACgGgcGCGACGACggcGGUaaucACAACg -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGa--UCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 114248 0.71 0.997093
Target:  5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3'
miRNA:   3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 2166 0.7 0.998291
Target:  5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 134940 0.7 0.998832
Target:  5'- gACGGCUGggGCGACcAU---UGCAGCa -3'
miRNA:   3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 71561 0.7 0.998832
Target:  5'- gGCGACU--UGCGACAACcGGaGCAGa -3'
miRNA:   3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5'
30123 5' -46.9 NC_006273.1 + 197058 0.7 0.998832
Target:  5'- gACGACgGUggcgGCGACGACacg-GCGACg -3'
miRNA:   3'- -UGCUGaCAa---CGCUGUUGaucaUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.