Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 71879 | 0.76 | 0.940908 |
Target: 5'- uCGACUGcgGCGGCAACgGGcGCGACa -3' miRNA: 3'- uGCUGACaaCGCUGUUGaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 178661 | 0.68 | 0.999908 |
Target: 5'- gGCGGCgGUgGCGGCAAgaAGcACGACc -3' miRNA: 3'- -UGCUGaCAaCGCUGUUgaUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 100405 | 0.67 | 0.99993 |
Target: 5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3' miRNA: 3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 56915 | 0.66 | 0.999994 |
Target: 5'- gACGACaGUgGCGGCAGC-AGcccguuugGCAGCg -3' miRNA: 3'- -UGCUGaCAaCGCUGUUGaUCa-------UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 201286 | 0.72 | 0.993605 |
Target: 5'- gGCGACgGgcGCGACGACggcGGUaaucACAACg -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGa--UCA----UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 114248 | 0.71 | 0.997093 |
Target: 5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3' miRNA: 3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 134940 | 0.7 | 0.998832 |
Target: 5'- gACGGCUGggGCGACcAU---UGCAGCa -3' miRNA: 3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 71561 | 0.7 | 0.998832 |
Target: 5'- gGCGACU--UGCGACAACcGGaGCAGa -3' miRNA: 3'- -UGCUGAcaACGCUGUUGaUCaUGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 118106 | 0.69 | 0.999368 |
Target: 5'- gGCGGCUGUacaggagaugGCGGuuCGACUGGagGCGACg -3' miRNA: 3'- -UGCUGACAa---------CGCU--GUUGAUCa-UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 20376 | 0.68 | 0.999908 |
Target: 5'- gACGACgGUcgcUGCGACGgucGCUGccACAGCa -3' miRNA: 3'- -UGCUGaCA---ACGCUGU---UGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 188717 | 0.69 | 0.999593 |
Target: 5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3' miRNA: 3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 189702 | 0.7 | 0.998832 |
Target: 5'- cGCGcccACaUG-UGCGGCGuCUGGUGCAACa -3' miRNA: 3'- -UGC---UG-ACaACGCUGUuGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 24373 | 0.75 | 0.958273 |
Target: 5'- gGCGGCUGUU-CGACAGCg---GCAACa -3' miRNA: 3'- -UGCUGACAAcGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 201853 | 0.68 | 0.99984 |
Target: 5'- -aGACcuucUGCGACuuucucgAGCUGGUGCAGCg -3' miRNA: 3'- ugCUGaca-ACGCUG-------UUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 40029 | 0.73 | 0.983821 |
Target: 5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3' miRNA: 3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 197058 | 0.7 | 0.998832 |
Target: 5'- gACGACgGUggcgGCGACGACacg-GCGACg -3' miRNA: 3'- -UGCUGaCAa---CGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 82921 | 0.68 | 0.999844 |
Target: 5'- aGCGGCUGgagGCG-CAGCUGc-GCGGCa -3' miRNA: 3'- -UGCUGACaa-CGCuGUUGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 111003 | 0.68 | 0.999917 |
Target: 5'- cGCGGCUGUcggcgcuuuucgucaUgcuGCGACAGCUGG-AUGACc -3' miRNA: 3'- -UGCUGACA---------------A---CGCUGUUGAUCaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 233518 | 0.72 | 0.992612 |
Target: 5'- cGCGAaagcCUGUUcGCGGCAGC--GUACGACg -3' miRNA: 3'- -UGCU----GACAA-CGCUGUUGauCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 2166 | 0.7 | 0.998291 |
Target: 5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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