miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 188717 0.69 0.999593
Target:  5'- cGCGGCUGUUGCGGUAG-UGGUuaGCGAg -3'
miRNA:   3'- -UGCUGACAACGCUGUUgAUCA--UGUUg -5'
30123 5' -46.9 NC_006273.1 + 2166 0.7 0.998291
Target:  5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 176569 0.66 0.999984
Target:  5'- uUGGCgagUGUGACAuGCcGGUGCAGCg -3'
miRNA:   3'- uGCUGacaACGCUGU-UGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 100405 0.67 0.99993
Target:  5'- gGCGGCUGUgGCGggucGCGACg---ACGACa -3'
miRNA:   3'- -UGCUGACAaCGC----UGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 114248 0.71 0.997093
Target:  5'- uCGACuUGUUGCuGCAGCgcgggccucAGUACAGCg -3'
miRNA:   3'- uGCUG-ACAACGcUGUUGa--------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 144441 0.66 0.999984
Target:  5'- uGCGACUGcacgGCGGCGAggcGGUGCGc- -3'
miRNA:   3'- -UGCUGACaa--CGCUGUUga-UCAUGUug -5'
30123 5' -46.9 NC_006273.1 + 201286 0.72 0.993605
Target:  5'- gGCGACgGgcGCGACGACggcGGUaaucACAACg -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGa--UCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233518 0.72 0.992612
Target:  5'- cGCGAaagcCUGUUcGCGGCAGC--GUACGACg -3'
miRNA:   3'- -UGCU----GACAA-CGCUGUUGauCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 69350 0.67 0.99993
Target:  5'- -aGaACUGgagGaCGACGACgAGUACGACg -3'
miRNA:   3'- ugC-UGACaa-C-GCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 102909 0.66 0.999989
Target:  5'- cACGGCgaaucaGUUGCGACAAC-GGUccguuGCGAa -3'
miRNA:   3'- -UGCUGa-----CAACGCUGUUGaUCA-----UGUUg -5'
30123 5' -46.9 NC_006273.1 + 189702 0.7 0.998832
Target:  5'- cGCGcccACaUG-UGCGGCGuCUGGUGCAACa -3'
miRNA:   3'- -UGC---UG-ACaACGCUGUuGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 134940 0.7 0.998832
Target:  5'- gACGGCUGggGCGACcAU---UGCAGCa -3'
miRNA:   3'- -UGCUGACaaCGCUGuUGaucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 162997 0.67 0.999971
Target:  5'- uCGACg---GCGGCAGCUgcggcGGUAgGACa -3'
miRNA:   3'- uGCUGacaaCGCUGUUGA-----UCAUgUUG- -5'
30123 5' -46.9 NC_006273.1 + 71804 0.66 0.999984
Target:  5'- cGCGGCgGUgGCGACAACggGGUuuACcACg -3'
miRNA:   3'- -UGCUGaCAaCGCUGUUGa-UCA--UGuUG- -5'
30123 5' -46.9 NC_006273.1 + 229448 0.69 0.999491
Target:  5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5'
30123 5' -46.9 NC_006273.1 + 214981 0.69 0.999368
Target:  5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3'
miRNA:   3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 148642 0.66 0.999978
Target:  5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3'
miRNA:   3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 138101 0.73 0.987352
Target:  5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 87613 0.67 0.999947
Target:  5'- cGCcGCUGUUGCGGCGguaGCUGaUACggUg -3'
miRNA:   3'- -UGcUGACAACGCUGU---UGAUcAUGuuG- -5'
30123 5' -46.9 NC_006273.1 + 1215 0.67 0.999947
Target:  5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3'
miRNA:   3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.